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hempelc/README.md

Welcome to my GitHub profile!

I’m Chris, a dedicated Bioinformatics Contractor and Consultant. I’m passionate about unlocking the secrets hidden in biological data. With my expertise in data analysis, genomics, and programming, I specialize in finding innovative solutions to complex bioinformatical problems. Below you'll find the projects I've been working on. Enjoy scrolling and feel free to reach out to me anytime!

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  1. MyScripts MyScripts Public

    Contains all scripts I'm commonly using. Some scripts are under development. Mainly used for backups.

    Shell

  2. metagenomics-vs-totalRNASeq metagenomics-vs-totalRNASeq Public

    Compares metagenomics and total RNA-Seq data-processing pieplines for microbial identification. Includes scripts to run pipelines on HPC clusters or locally, as well as scripts for statistical anal…

    Python 1 1

  3. apscale_wrapper apscale_wrapper Public

    A wrapper for the metabarcoding pipeline APSCALE to automatize the generation of apscale projects, quality control graphs, post-processing, and taxonomic annotation.

    Python

  4. mitogenome_assembly_evaluation mitogenome_assembly_evaluation Public

    Comparing and evaluating mitogenome assemblers

    Shell

  5. exstream-metagenomics-totalrnaseq-ml exstream-metagenomics-totalrnaseq-ml Public

    Scripts for data-processing and machine learning-based analysis of metagenomics and total RNA-Seq data from the ExStream project

    Python

  6. apscale apscale Public

    Forked from DominikBuchner/apscale

    Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data

    Python