HISTOGRAPHER INFRASTRUCTURE

You need to have docker and docker-compose installed

Installation

• Create a copy of .env.sample with the name .env
• Fill the .env file where appropriate

Local Development

• run docker-compose -f docker-compose.traefik.yml up -d to run the traefik container
• run docker-compose -f docker-compose.cytomine.yml up -d to run the cytomine service
• run docker-compose -f docker-compose.analysis.yml up -d to run the analysis service
  • Analysis repository
• run docker-compose -f docker-compose.wizard.yml up -d to run the wizard service
  • Wizard backend repository
  • Wizard frontend repository
• run docker-compose -f docker-compose.compare.yml up -d to run the compare service
  • Compare backend repository
  • Compare frontent repository

Mac OS specifics

You need to create local folders that you specify under #the storage path for your server in .env. Make sure you have the correct path and have access to the folders. If you do not do this correctly, you will not be able to upload images.

Production

To create safe passwords, we recommend to run ./generate_secrets.sh and copy the passwords that are generated over to .env.

You can follow the same proceedure as with local development if you only intend to run some of the services. If you want to run all services, run ./docker-containers-up.sh and they will deploy.