This repository maintains the Nextflow workflow code for Mutect2 somatic variant calling. The underlying variant calling and related tools are originated from GATK https://github.com/broadinstitute/gatk.
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ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
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ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
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