Rename Swift to Marlin

.coverage

@@ -1,4 +1,4 @@
-# Coverage requirement configuration for swift, enforced in CIVET testing
+# Coverage requirement configuration for Marlin, enforced in CIVET testing
 #
 # Valid configuration options:
 # - require_new: Requires this percentage of coverage for new lines added

.gitignore

@@ -331,4 +331,4 @@ share/
 /modules/misc/misc.yaml
 /tutorials/tutorial01_app_development/*/babbler.yaml
 /tutorials/darcy_thermo_mech/*/darcy_thermo_mech.yaml
-swift.yaml
+marlin.yaml

Makefile

@@ -56,7 +56,7 @@ include $(MOOSE_DIR)/modules/modules.mk
 
 # dep apps
 APPLICATION_DIR    := $(CURDIR)
-APPLICATION_NAME   := swift
+APPLICATION_NAME   := marlin
 BUILD_EXEC         := yes
 GEN_REVISION       := no
 include            $(FRAMEWORK_DIR)/app.mk

README.md

@@ -1,11 +1,12 @@
- <img src="https://github.com/idaholab/marlin/blob/rename_swift_to_marlin/doc/content/marlin.png?raw=true" width="80%" alt="Marlin Logo">
+ <img src="https://github.com/idaholab/marlin/blob/main/doc/content/marlin.png?raw=true" width="80%" alt="Marlin Logo">
 
-**Marlin** is a device independent Fourier spectral solver application based on the [MOOSE Finite Element Framework](http://mooseframework.org). Marlin supports[^1] CPU, CUDA, and MPS[^2] with automatic detection of supported device precision. <!-- [<img align="right" src="https://civet.inl.gov/idaholab/swift/main/branch_status.svg/">](https://civet.inl.gov/repo/idaholab/swift/) -->
+**Marlin** is a device independent Fourier spectral solver application based on the [MOOSE Finite Element Framework](http://mooseframework.org). Marlin supports[^1] CPU, CUDA, and MPS[^2] with automatic detection of supported device precision.
+[<img align="right" src="https://civet.inl.gov/idaholab/marlin/main/branch_status.svg/">](https://civet.inl.gov/repo/idaholab/marlin/)
 
 [^1]: more compute device types might be supported, but have not been tested.
 [^2]: torch MPS supports only single precision calculations!
 
-> Note: Marlin was previously named Swift <img src="https://github.com/idaholab/swift/blob/main/doc/content/swift.png?raw=true" height="20pt">
+> Note: Marlin was previously named Swift <img src="https://github.com/idaholab/marlin/blob/main/doc/content/swift.png?raw=true" height="20pt">
 
 ## Contacts
 

doc/config.yml

@@ -1,5 +1,5 @@
 Content:
-    swift:
+    marlin:
         root_dir: ${ROOT_DIR}/doc/content
     moose:
         root_dir: ${MOOSE_DIR}/framework/doc/content
@@ -12,12 +12,12 @@ Renderer:
     type: MooseDocs.base.MaterializeRenderer
 Extensions:
     MooseDocs.extensions.navigation:
-        name: swift
-        repo: https://github.com/idaholab/swift
+        name: marlin
+        repo: https://github.com/idaholab/marlin
         menu:
             Getting Started:
-                Installing Swift: installation.md
-                Help Forum: https://github.com/idaholab/swift/discussions
+                Installing Marlin: installation.md
+                Help Forum: https://github.com/idaholab/marlin/discussions
             Documentation:
                 Syntax Index: syntax/index.md
                 Source Index: source/index.md

doc/content/citing.md

@@ -1,3 +1,3 @@
-# How to cite Swift
+# How to cite Marlin
 
 SoftwareX publication is in preparation. Check back soon!

doc/content/index.md

@@ -1,10 +1,8 @@
 !config navigation breadcrumbs=False scrollspy=False
 
-!media swift.svg style=display:block;margin-left:auto;margin-right:auto;margin-top:1em;width:30%;
+!media marlin.svg style=display:block;margin-left:auto;margin-right:auto;margin-top:1em;width:30%;
 
-# Swift class=center style=font-weight:500;font-size:350%;margin-top:0
-
-# a Fourier spectral solver application based on the [MOOSE Finite Element Framework](http://mooseframework.org) class=center style=font-weight:300;font-size:150%
+# based on the [MOOSE Finite Element Framework](http://mooseframework.org) class=center style=font-weight:300;font-size:150%
 
 !row!
 !col! small=12 medium=4 large=4 icon=computer

doc/content/installation.md

@@ -1,4 +1,4 @@
-# Installing Swift
+# Installing Marlin
 
 ## Linux and INL HPC
 
@@ -9,7 +9,7 @@ Use the `moose-dev-openmpi-cudatorch-x86_64` [apptainer](https://mooseframework.
 **Conda:** create a separate conda environment for PyTorch (and do not activate it)
 
 ```
-conda create -n pytorch_swift pytorch
+conda create -n pytorch_marlin pytorch
 ```
 
 Check out and update the MOOSE submodule
@@ -22,18 +22,18 @@ Use the MOOSE configure script to enable libtorch and point it to the pytorch co
 
 ```
 cd moose
-export LIBTORCH_DIR=$(conda activate pytorch_swift; echo $CONDA_PREFIX; conda deactivate)
+export LIBTORCH_DIR=$(conda activate pytorch_marlin; echo $CONDA_PREFIX; conda deactivate)
 ./configure --with-libtorch
 ```
 
-Step back into the swift root directory and build.
+Step back into the marlin root directory and build.
 
 ```
 cd ..
 make -j
 ```
 
-Swift on arm64 macs installed this way will support `cpu` and `mps` as compute devices. An mps/cpu (12 threads) runtime comparison for an M2 max laptop is shown below. Note that MPS only supports single precision (32bit) floating point numbers.
+Marlin on arm64 macs installed this way will support `cpu` and `mps` as compute devices. An mps/cpu (12 threads) runtime comparison for an M2 max laptop is shown below. Note that MPS only supports single precision (32bit) floating point numbers.
 
 | Example | `cpu` runtime | `mps` runtime |
 | - | - | - |