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RunHarmony() Error on macOS: “Invalid number of ncores provided: 0. Maximum available cores: NA”

Status: Open.

#274 In immunogenomics/harmony;

· Krystalkeke opened on Oct 29, 2025

Sporadic test failure on Windows

Status: Open.

#272 In immunogenomics/harmony;

· mfansler opened on Aug 22, 2025

RunHarmony appears to be ignoring max_iter (and max.iter.harmony)

Status: Open.

#271 In immunogenomics/harmony;

· brianlamere opened on Aug 21, 2025

Batch Correction in scRNA-seq: How to Preserve Biological Differences

Status: Open.

#270 In immunogenomics/harmony;

· sunsunb opened on Apr 17, 2025

Consider modifying <code>early_stop</code> threshold

Status: Open.

#269 In immunogenomics/harmony;

· doliv071 opened on Apr 14, 2025

Outdated Citation

Status: Open.

#267 In immunogenomics/harmony;

· DarioS opened on Feb 26, 2025

Clustering by variable and not by UMAP after RunHarmony

Status: Open.

#266 In immunogenomics/harmony;

· RRingquist opened on Jan 27, 2025

Changes in 1.2.3

Status: Open.

#265 In immunogenomics/harmony;

· wudustan opened on Dec 3, 2024

Typo in detailed walkthrough?

Status: Open.

#264 In immunogenomics/harmony;

· dariober opened on Nov 9, 2024

Best Practices for Sequential vs. Parallel Regression of Multiple Covariates in Harmony

Status: Open.

#263 In immunogenomics/harmony;

· vertesy opened on Nov 5, 2024

Is Regressing Covariates in Both ScaleData and RunHarmony Redundant and Potentially Problematic?

Status: Open.

#262 In immunogenomics/harmony;

· vertesy opened on Nov 5, 2024

different clustering results

questionFurther information is requestedFurther information is requested

Status: Open.

#259 In immunogenomics/harmony;

· pikapika505 opened on Sep 10, 2024