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jcblemai/README.md

Welcome 🤗😊

I am a researcher in infectious disease dynamics where I develop models that combine scientific knowledge and state-of-the-art statistical methods to guide effective policies from noisy, incomplete, and often misleading data. Most of my work concerns COVID-19, seasonal influenza or cholera.

I’m an Assistant Professor at The University of North Carolina at Chapel Hill, working within the Atlantic Coast Center for Infectious Disease Dynamics and Analytics (ACCIDDA), the Insight Net coordinating center. My current projects include:

  • flepiMoP (GitHub), an open-source flexible epidemic modeling pipeline that can simulate most compartmental models over a wide range of connected metapopulation setups. It has been used to track the COVID-19 pandemic and seasonal influenza, providing forecasts and scenarios to decision-makers around the world.
  • InfluPaint, where we inpaint epidemic curves generated by denoising diffusion probabilistic models, to produce forecasts of influenza transmission in the U.S.
  • SMIDDY, aimed to foster the community of infectious disease modelers in Switzerland 👯.

I’m usually working from Vevey in Switzerland🇨🇭. Don’t hesitate to reach out if you pass by the Geneva Lake area, or even if you don’t. Happy to discuss anything 🤔

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  1. HopkinsIDD/flepiMoP HopkinsIDD/flepiMoP Public

    The Flexible Epidemic Modeling Pipeline

    HTML 9 4

  2. HopkinsIDD/COVIDScenarioPipeline HopkinsIDD/COVIDScenarioPipeline Public archive

    Public shared code for doing scenario forecasting and creating reports for various governmental entities.

    HTML 104 47

  3. influpaint influpaint Public

    Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting

    Jupyter Notebook 9

  4. COVID-19_italy-vaccination-oc COVID-19_italy-vaccination-oc Public

    Optimal control for an hypothetical COVID-19 vaccine, available with limited supply in Italy.

    Jupyter Notebook 1

  5. PhDThesis PhDThesis Public

    TeX

  6. haiti-mass-ocv-campaign haiti-mass-ocv-campaign Public

    R