v1.0.4 - build additional indices at runtime

quito418 released this 29 Apr 04:24

· 44 commits to master since this release

bwa-meme uses runtime index build as default. See #10

bwa-meme index .possa_packed and .ref2sa_packed are now removed at default setting. Index build requires less than 1 hour with 16~32 threads.
bwa-meme mem -7 loads ref.pos_packed file at startup. Depending on the bwa-meme mode, other indices (.possa_packed and ref2sa_packed) are built based on it (instead of reading files).

Minor update 220504: Source_BWA-MEME_r1.tar.gz

Added mimalloc as default
Minor fix in version number printed

Assets 5