Update auto_bioconda_pr.yaml #9
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| name: Auto Bioconda PR with Test & meta.yaml generation (Manual Only) | ||
| on: | ||
| workflow_dispatch: | ||
| jobs: | ||
| bioconda_pr: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout this repo | ||
| uses: actions/checkout@v3 | ||
| - name: Extract version and package name using ast | ||
| id: vars | ||
| run: | | ||
| set -e | ||
| INIT_PATH=$(find . -type f -name '__init__.py' | head -n1) | ||
| echo "📄 Found __init__.py at: $INIT_PATH" | ||
| echo "import ast" > get_version.py | ||
| echo "with open('$INIT_PATH') as f:" >> get_version.py | ||
| echo " tree = ast.parse(f.read())" >> get_version.py | ||
| echo "for node in ast.walk(tree):" >> get_version.py | ||
| echo " if isinstance(node, ast.Assign) and getattr(node.targets[0], 'id', None) == '__version__':" >> get_version.py | ||
| echo " print(node.value.s)" >> get_version.py | ||
| echo " break" >> get_version.py | ||
| VERSION=$(python3 get_version.py) | ||
| PACKAGE=$(basename $(dirname "$INIT_PATH")) | ||
| if [ -z "$VERSION" ]; then | ||
| echo "❌ __version__ not found" | ||
| exit 1 | ||
| fi | ||
| echo "📦 PACKAGE: $PACKAGE" | ||
| echo "📌 VERSION: $VERSION" | ||
| echo "VERSION=$VERSION" >> $GITHUB_ENV | ||
| echo "PACKAGE=$PACKAGE" >> $GITHUB_ENV | ||
| - name: Generate meta.yaml in recipes/${{ env.PACKAGE }} | ||
| run: | | ||
| mkdir -p recipes/${PACKAGE} | ||
| cat <<'EOF' > recipes/${PACKAGE}/meta.yaml | ||
| {% set name = "{{ name }}" %} | ||
| {% set version = "{{ version }}" %} | ||
| package: | ||
| name: "{{ name|lower }}" | ||
| version: "{{ version }}" | ||
| source: | ||
| url: https://github.com/kamome1201/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz | ||
| sha256: "TO_BE_REPLACED" | ||
| build: | ||
| number: 0 | ||
| noarch: python | ||
| script: "{{ PYTHON }} -m pip install . -vv --ignore-installed --no-deps" | ||
| requirements: | ||
| host: | ||
| - python >=3.8 | ||
| - pip | ||
| - setuptools | ||
| - wheel | ||
| run: | ||
| - python >=3.8 | ||
| test: | ||
| imports: | ||
| - {{ name }} | ||
| about: | ||
| home: "https://github.com/kfuku52/{{ name }}" | ||
| license: "BSD-3-Clause" | ||
| license_file: "LICENSE" | ||
| summary: "Short summary of what {{ name }} does." | ||
| EOF | ||
| - name: Download source archive and compute SHA256 | ||
| run: | | ||
| url="https://github.com/kamome1201/${PACKAGE}/archive/refs/tags/v${VERSION}.tar.gz" | ||
| wget -O source.tar.gz "$url" | ||
| SHA256=$(sha256sum source.tar.gz | awk '{print $1}') | ||
| echo "SHA256=$SHA256" >> $GITHUB_ENV | ||
| - name: Clone your fork of bioconda-recipes | ||
| run: | | ||
| git clone https://github.com/kamome1201/bioconda-recipes.git | ||
| cd bioconda-recipes | ||
| git remote add upstream https://github.com/bioconda/bioconda-recipes.git | ||
| git fetch upstream | ||
| git checkout -B add-${PACKAGE}-${VERSION} upstream/master | ||
| - name: Copy recipe into bioconda-recipes | ||
| run: | | ||
| cp -r recipes/${PACKAGE} bioconda-recipes/recipes/ | ||
| - name: Replace sha256 in meta.yaml | ||
| run: | | ||
| sed -i "s|sha256: .*|sha256: \"${SHA256}\"|" bioconda-recipes/recipes/${PACKAGE}/meta.yaml | ||
| - name: Create config.yml for bioconda-utils | ||
| run: | | ||
| cat <<EOF > bioconda-recipes/config.yml | ||
| channels: | ||
| - bioconda | ||
| - conda-forge | ||
| - defaults | ||
| EOF | ||
| - name: Check copied recipe contents | ||
| run: | | ||
| ls -R bioconda-recipes/recipes/${PACKAGE} | ||
| - name: Run lint + build + test with bioconda-utils (Docker) | ||
| run: | | ||
| ABS_PATH=$(realpath bioconda-recipes) | ||
| docker run --rm -v $ABS_PATH:/bioconda-recipes \ | ||
| quay.io/bioconda/bioconda-utils-build-env \ | ||
| bash -c "cd /bioconda-recipes && bioconda-utils build recipes config.yml --packages ${PACKAGE} --loglevel info --docker --git-range master" | ||
| # 以下のステップは一時的にコメントアウトされています（必要時に有効化してください） | ||
| # - name: Commit and push | ||
| # run: | | ||
| # cd bioconda-recipes | ||
| # git config user.name "github-actions" | ||
| # git config user.email "[email protected]" | ||
| # git add recipes/${PACKAGE} | ||
| # git commit -m "Add ${PACKAGE} v${VERSION} [auto-generated]" | ||
| # git push origin add-${PACKAGE}-${VERSION} | ||
| # - name: Create Pull Request | ||
| # uses: peter-evans/create-pull-request@v5 | ||
| # with: | ||
| # token: ${{ secrets.GH_PAT }} | ||
| # title: "Add ${PACKAGE} recipe v${{ env.VERSION }}" | ||
| # commit-message: "Auto PR: ${PACKAGE} v${{ env.VERSION }}" | ||
| # base: master | ||
| # branch: add-${PACKAGE}-${{ env.VERSION }} | ||
| # body: | | ||
| # This PR was automatically generated by GitHub Actions. | ||
| # - **Package**: ${{ env.PACKAGE }} | ||
| # - **Version**: v${{ env.VERSION }} | ||
| # - **SHA256**: ${{ env.SHA256 }} | ||
