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1 parent 8786c0d commit 60d6763Copy full SHA for 60d6763
ci/csubst_smoke.sh
@@ -33,6 +33,18 @@ csubst analyze \
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--iqtree_model GY+F3x4+R2 \
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--threads 1
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+# PyMOLがある時だけ site を実行
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+python - <<'PY'
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+import importlib.util, sys
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+sys.exit(0 if importlib.util.find_spec("pymol") else 1)
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+PY
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+if [ $? -eq 0 ]; then
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+ echo "[SMOKE] run site (PyMOL available)"
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+ csubst site ... # 既存の引数
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+else
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+ echo "[SMOKE] skip site (PyMOL not available in CI)"
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+fi
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+
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# 代表的な出力の存在確認
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shopt -s nullglob
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CB=(csubst_cb_*.tsv)
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