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Diagonal elements should still be zeros.

bug

Status: Open.

#77 In kfuku52/csubst;

· kfuku52 opened on Sep 16, 2025

Test the performance of threadpoolctl and obsolete if possible

enhancement

Status: Open.

#64 In kfuku52/csubst;

· kfuku52 opened on Dec 31, 2024

--fg_clade_permutation is broken in v1.4.0

bug

Status: Open.

#54 In kfuku52/csubst;

· kfuku52 opened on Dec 16, 2023

Including all branch combinations with --fg_clade_permutation

enhancement

Status: Open.

#53 In kfuku52/csubst;

· kfuku52 opened on Dec 16, 2023

Loading foreground-only ancestral states with --exhaustive_until 1

enhancement

Status: Open.

#50 In kfuku52/csubst;

· kfuku52 opened on Oct 23, 2023

prioritize convergence in conserved sites

enhancement

Status: Open.

#47 In kfuku52/csubst;

· kfuku52 opened on Aug 31, 2023

P value for excess convergence

enhancement

Status: Open.

#46 In kfuku52/csubst;

· kfuku52 opened on Aug 31, 2023

tree + site plot in csubst site

enhancement

Status: Open.

#42 In kfuku52/csubst;

· kfuku52 opened on May 23, 2023

csubst site --mode

enhancement

Status: Open.

#37 In kfuku52/csubst;

· kfuku52 opened on Apr 13, 2023

support uniprot info retrieval

enhancement

Status: Open.

#15 In kfuku52/csubst;

· kfuku52 opened on May 31, 2021

Handling the cb table as a memory map

enhancement

Status: Open.

#12 In kfuku52/csubst;

· kfuku52 opened on Feb 26, 2021

sparse matrix

enhancement

Status: Open.

#7 In kfuku52/csubst;

· kfuku52 opened on Sep 9, 2020