Model of neuronal chloride homeostasis

Single compartment model (this repo)

Figures 1 through 6 of the paper "Biophysical models reveal the relative importance of transporter proteins and impermeant anions in chloride homeostasis" by Düsterwald, Currin, Burman, Akerman, Kay and Raimondo

If you would like a demonstration of the first section of figures in the paper (https://www.biorxiv.org/content/early/2017/11/08/216150), see the notebook "runme_figures_1_to_6" in this repo.

Multi-compartment model (multi-compartment-model submodule)

Figures 7 and 8 of the paper "Biophysical models reveal the relative importance of transporter proteins and impermeant anions in chloride homeostasis" by Düsterwald, Currin, Burman, Akerman, Kay and Raimondo

If you would like a demonstration of the latter section of figures in the paper and demonstrations of neuronal chloride homeostatic mechanisms across multiple compartments (incorporating electrodiffusion), see the notebook "runme_figures_7_and_8" in the submodule "multi-compartment-model" (https://github.com/Chris-Currin/multi-compartment_multi-anion), which can be navigated to directly from this repo.