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Strobealign v0.15-v0.16 fail with seg fault, previous versions do not

Status: Open.

#529 In ksahlin/strobealign;

· tprodanov opened on Dec 11, 2025

Experimental ancient DNA modifications

Status: Open.

#523 In ksahlin/strobealign;

· teepean opened on Oct 5, 2025

[Feature Request] - Optionally output unaligned reads as fastq

Status: Open.

#520 In ksahlin/strobealign;

· jolespin opened on Sep 22, 2025

about the run memory

Status: Open.

#519 In ksahlin/strobealign;

· Wanli-HE opened on Sep 17, 2025

CLI option to always include SEQ/QUAL in SAM output

Status: Open.

#507 In ksahlin/strobealign;

· sjaenick opened on Jun 25, 2025

Tweaks to integrate salib as a library via cmake

Status: Open.

#505 In ksahlin/strobealign;

· blinard-BIOINFO opened on Jun 13, 2025

Release Python bindings to PyPI

Status: Open.

#496 In ksahlin/strobealign;

· althonos opened on Apr 27, 2025

Potential issues in using same reference length for large libraries of variable read length?

Status: Open.

#493 In ksahlin/strobealign;

· Rridley7 opened on Apr 8, 2025

Speed vs. reference size

Status: Open.

#484 In ksahlin/strobealign;

· shiraz-shah opened on Mar 12, 2025

Feature request: Keep index in memory while mapping multiple samples in a row

Status: Open.

#483 In ksahlin/strobealign;

· shiraz-shah opened on Mar 11, 2025

Usage of mmap for compressed input leads to inflated resident set size

Status: Open.

#481 In ksahlin/strobealign;

· marcelm opened on Feb 6, 2025

Some reads are almost entirely soft-clipped

Status: Open.

#477 In ksahlin/strobealign;

· marcelm opened on Jan 21, 2025