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CLI option to always include SEQ/QUAL in SAM output

Status: Open.

#507 In ksahlin/strobealign;

· sjaenick opened on Jun 25, 2025

Tweaks to integrate salib as a library via cmake

Status: Open.

#505 In ksahlin/strobealign;

· blinard-BIOINFO opened on Jun 13, 2025

Release Python bindings to PyPI

Status: Open.

#496 In ksahlin/strobealign;

· althonos opened on Apr 27, 2025

Potential issues in using same reference length for large libraries of variable read length?

Status: Open.

#493 In ksahlin/strobealign;

· Rridley7 opened on Apr 8, 2025

Speed vs. reference size

Status: Open.

#484 In ksahlin/strobealign;

· shiraz-shah opened on Mar 12, 2025

Feature request: Keep index in memory while mapping multiple samples in a row

Status: Open.

#483 In ksahlin/strobealign;

· shiraz-shah opened on Mar 11, 2025

Usage of mmap for compressed input leads to inflated resident set size

Status: Open.

#481 In ksahlin/strobealign;

· marcelm opened on Feb 6, 2025

Some reads are almost entirely soft-clipped

Status: Open.

#477 In ksahlin/strobealign;

· marcelm opened on Jan 21, 2025

Investigating the scoring function in paired end mode

Status: Open.

#469 In ksahlin/strobealign;

· ksahlin opened on Dec 11, 2024

Question about SyncmerIterator

Status: Open.

#463 In ksahlin/strobealign;

· drtconway opened on Dec 2, 2024

Question: Identity threshold

Status: Open.

#462 In ksahlin/strobealign;

· stas-malavin opened on Nov 26, 2024

estimating breadth of coverage with strobealign --aemb

Status: Open.

#456 In ksahlin/strobealign;

· wwood opened on Nov 12, 2024