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Mixed CLI frameworks

Release ControlProcedures, Workflows, and Code supporting Release ControlProcedures, Workflows, and Code supporting Release Control

Status: Open.

#227 In linkml/dm-bip;

· amc-corey-cox opened on Dec 17, 2025

Silent Exception in updated_flatten_to_tsv

Release ControlProcedures, Workflows, and Code supporting Release ControlProcedures, Workflows, and Code supporting Release Control

Status: Open.

#226 In linkml/dm-bip;

· amc-corey-cox opened on Dec 17, 2025

Replace print() statements with logging module

Audit LogsHuman Readable logs and trans specsHuman Readable logs and trans specs

Status: Open.

#223 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Implement data mapping from multiple classes

Pipeline ImprovementImproving Automation, Integration, Testing, etc.Improving Automation, Integration, Testing, etc.

Status: Open.

Feature

#222 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Ensure all Cohort groups are ingested

Data DeliveryQC and Delivery of Harmonized DataQC and Delivery of Harmonized Data

Status: Open.

Task

#221 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Remove Hardcoded entity list from map_data.py

BDC ApplicationBring Harmonization to BDC for User ApplicationBring Harmonization to BDC for User Application

Status: Open.

Feature

#220 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Fix linting errors in notebooks

Release ControlProcedures, Workflows, and Code supporting Release ControlProcedures, Workflows, and Code supporting Release Control

Status: Open.

Task

#219 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Improve Test Coverage

Release ControlProcedures, Workflows, and Code supporting Release ControlProcedures, Workflows, and Code supporting Release Control

Status: Open.

Task

#218 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Implement Code Coverage Monitoring

Release ControlProcedures, Workflows, and Code supporting Release ControlProcedures, Workflows, and Code supporting Release Control

Status: Open.

Task

#217 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Implement or remove CLI

BDC ApplicationBring Harmonization to BDC for User ApplicationBring Harmonization to BDC for User Application

Status: Open.

Feature

#216 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Move Harmonica (OntoAnntate) to external tool

Release ControlProcedures, Workflows, and Code supporting Release ControlProcedures, Workflows, and Code supporting Release Control

Status: Open.

#215 In linkml/dm-bip;

· amc-corey-cox opened on Dec 15, 2025

Define Audit Log Requirements

Audit LogsHuman Readable logs and trans specsHuman Readable logs and trans specs

Status: Open.

#213 In linkml/dm-bip;

· amc-corey-cox opened on Dec 12, 2025