Crucian carp eDNA surveillance

Data processing workflow and supplementary data for:

Harper et al. (2019) Development and application of environmental DNA surveillance for the threatened crucian carp (Carassius carassius). Freshwater Biology, 64, 93-107. https://doi.org/10.1111/fwb.13197

Permanently archived at:

Contents

R scripts used to analyse qPCR data and produce figures (here)

Data needed to run analyses in R (here)

Setting up the environment

In order to retrieve scripts and associated data, start by cloning this repository to your current directory:

git clone --recursive https://github.com/lrharper1/crucian_carp_eDNA_surveillance.git

In order to make use of our scripts and data, you will have to install R on your computer. R is compatible with all major operating systems, but see CRAN (https://cran.r-project.org/) for details.

Once R is installed, open our R script in the R console and simply run the code!