Make terminal commands start with disdrodb prefix

README.md

@@ -74,7 +74,7 @@ or set up the (temporary) environment variable `DISDRODB_BASE_DIR` in your termi
 To download all data stored into the DISDRODB Decentralized Data Archive, you just have to run the following command:
 
 ```bash
-   download_disdrodb_archive
+   disdrodb_download_archive
 ```
 
 #### 💫 Transform the raw data to standardized netCDF files.
@@ -83,7 +83,7 @@ If you want to convert all stations raw data into standardized netCDF4 files, ru
 
 ```bash
 
-   run_disdrodb_l0
+   disdrodb_run_l0
 
 ```
 

disdrodb/l0/l0_processing.py

@@ -773,7 +773,7 @@ def run_disdrodb_l0a_station(
     # Define command
     cmd = " ".join(
         [
-            "run_disdrodb_l0a_station",
+            "disdrodb_run_l0a_station",
             # Station arguments
             data_source,
             campaign_name,
@@ -812,7 +812,7 @@ def run_disdrodb_l0b_station(
     # Define command
     cmd = " ".join(
         [
-            "run_disdrodb_l0b_station",
+            "disdrodb_run_l0b_station",
             # Station arguments
             data_source,
             campaign_name,

disdrodb/l0/l0b_nc_concat.py

@@ -120,7 +120,7 @@ def run_disdrodb_l0b_concat_station(
     """
     cmd = " ".join(
         [
-            "run_disdrodb_l0b_concat_station",
+            "disdrodb_run_l0b_concat_station",
             data_source,
             campaign_name,
             station_name,

disdrodb/l0/scripts/run_disdrodb_l0a.py

@@ -91,9 +91,9 @@ def run_disdrodb_l0a(
     from disdrodb.l0.l0_processing import run_disdrodb_l0a
 
     # Parse data_sources, campaign_names and station arguments
-    print(data_sources)
-    print(campaign_names)
-    print(station_names)
+    # print(data_sources)
+    # print(campaign_names)
+    # print(station_names)
 
     data_sources = parse_arg_to_list(data_sources)
     campaign_names = parse_arg_to_list(campaign_names)

disdrodb/l0/scripts/run_disdrodb_l0a_station.py

@@ -87,6 +87,7 @@ def run_disdrodb_l0a_station(
     from dask.distributed import Client, LocalCluster
 
     from disdrodb.api.io import get_disdrodb_path
+    from disdrodb.configs import get_base_dir
     from disdrodb.l0.l0_reader import get_station_reader_function
 
     # -------------------------------------------------------------------------.
@@ -108,6 +109,7 @@ def run_disdrodb_l0a_station(
         Client(cluster)
     # -------------------------------------------------------------------------.
     # Get reader
+    base_dir = get_base_dir(base_dir)
     reader = get_station_reader_function(
         base_dir=base_dir,
         data_source=data_source,

disdrodb/l0/scripts/run_disdrodb_l0b_concat_station.py

@@ -67,9 +67,11 @@ def run_disdrodb_l0b_concat_station(
         If not specified, uses path specified in the DISDRODB active configuration. \n
     """
     from disdrodb.api.io import get_disdrodb_path
+    from disdrodb.configs import get_base_dir
     from disdrodb.l0.l0b_nc_concat import _concatenate_netcdf_files
 
     # Retrieve processed_dir
+    base_dir = get_base_dir(base_dir)
     processed_dir = get_disdrodb_path(
         base_dir=base_dir,
         product_level="L0B",

disdrodb/l0/scripts/run_disdrodb_l0b_station.py

@@ -86,6 +86,7 @@ def run_disdrodb_l0b_station(
     from dask.distributed import Client, LocalCluster
 
     from disdrodb.api.io import get_disdrodb_path
+    from disdrodb.configs import get_base_dir
     from disdrodb.l0.l0_processing import run_l0b
 
     # -------------------------------------------------------------------------.
@@ -108,6 +109,7 @@ def run_disdrodb_l0b_station(
 
     # -------------------------------------------------------------------------.
     # Define processed dir
+    base_dir = get_base_dir(base_dir)
     processed_dir = get_disdrodb_path(
         base_dir=base_dir,
         product_level="L0B",

docs/source/contribute_data.rst

@@ -132,7 +132,7 @@ To do so, run the following command:
 
 .. code:: bash
    export DISDRODB_BASE_DIR="<the_path_to_a_copy_of_the_disdrodb-data_you_edited/DISDRODB"
-   run_disdrodb_l0  --data_sources <your_data_source> --campaign_names <your_new_campaign>
+   disdrodb_run_l0  --data_sources <your_data_source> --campaign_names <your_new_campaign>
 
    ::note
       If the correctness of the reader has already been tested, you can add the ``--debugging_mode True`` parameter to just run the processing

docs/source/data_download.rst

@@ -66,7 +66,7 @@ To download all data stored into the DISDRODB Decentralized Data Archive, you ju
 
 .. code:: bash
 
-   download_disdrodb_archive  --data_sources <data_source> --campaign_names <campaign_name> --station_names <station_name> --force true
+   disdrodb_download_archive  --data_sources <data_source> --campaign_names <campaign_name> --station_names <station_name> --force true
 
 The ``data_sources``, ``campaign_names`` and ``station_names`` parameters are optional and are meant to restrict the download processing to a specific
 data source, campaign, or station.

docs/source/l0_processing.rst

@@ -14,16 +14,16 @@ There are two ways of process a station using DISDRODB.
 
 	.. code-block::
 
-		run_disdrodb_l0_station <data_source> <campaign_name> <station_name> [parameters]
+		disdrodb_run_l0_station <data_source> <campaign_name> <station_name> [parameters]
 
 
 	Example :
 
 	.. code-block::
 
-		run_disdrodb_l0_station EPFL_2008 10 --l0a_processing True --l0b_processing True --force True --verbose True --parallel False
+		disdrodb_run_l0_station EPFL_2008 10 --l0a_processing True --l0b_processing True --force True --verbose True --parallel False
 
-    Type ``run_disdrodb_l0_station --help`` in the terminal to get more information on the possible parameters.
+    Type ``disdrodb_run_l0_station --help`` in the terminal to get more information on the possible parameters.
 
 
 2. By calling a python function
@@ -98,21 +98,21 @@ For example, if only ``--campaign_names`` are specified, DISDRODB will process o
 
 	.. code-block::
 
-		run_disdrodb_l0 --data_sources <data_sources> --campaign_names <campaign_names> --station_names <station_names> [parameters]
+		disdrodb_run_l0 --data_sources <data_sources> --campaign_names <campaign_names> --station_names <station_names> [parameters]
 
 	Example :
 
 	.. code-block:: bash
 
-		run_disdrodb_l0 --campaign_names EPFL_2008 --l0a_processing True --l0b_processing True --parallel False
+		disdrodb_run_l0 --campaign_names EPFL_2008 --l0a_processing True --l0b_processing True --parallel False
 
 	To  specify multiple campaigns you can do the follow
 
 	.. code-block:: bash
 
-		run_disdrodb_l0  --campaign_names 'EPFL_2008 LOCARNO_2018' --l0a_processing True --l0b_processing True --parallel False
+		disdrodb_run_l0  --campaign_names 'EPFL_2008 LOCARNO_2018' --l0a_processing True --l0b_processing True --parallel False
 
-     Type ``run_disdrodb_l0 --help`` in the terminal to get more information on the possible parameters.
+     Type ``disdrodb_run_l0 --help`` in the terminal to get more information on the possible parameters.
 
 
 2. By calling a python function

docs/source/readers.rst

@@ -486,27 +486,27 @@ To run the processing of a single station, you can run:
 
     .. code-block:: bash
 
-        run_disdrodb_l0_station <data_source> <campaign_name> <station_name> [parameters]
+        disdrodb_run_l0_station <data_source> <campaign_name> <station_name> [parameters]
 
 
 For example, to process the data of station 10 of the EPFL_2008 campaign, you would run:
 
     .. code-block:: bash
 
-        run_disdrodb_l0_station EPFL  EPFL_2008 10 --force True --verbose True --parallel False
+        disdrodb_run_l0_station EPFL  EPFL_2008 10 --force True --verbose True --parallel False
 
 
 If no problems arise, try to run the processing for all stations within a campaign, with:
 
 	.. code-block:: bash
 
-		run_disdrodb_l0 --data_sources <data_sources> --campaign_names <campaign_names> [parameters]
+		disdrodb_run_l0 --data_sources <data_sources> --campaign_names <campaign_names> [parameters]
 
 For example, to process all stations of the EPFL_2008 campaign, you would run:
 
 	.. code-block:: bash
 
-		run_disdrodb_l0 --data_sources EPFL --campaign_names EPFL_2008 --force True --verbose True --parallel False
+		disdrodb_run_l0 --data_sources EPFL --campaign_names EPFL_2008 --force True --verbose True --parallel False
 
 
 .. note::

docs/source/software_structure.rst

@@ -10,7 +10,14 @@ The current software structure is described below:
 |     ├── 📜 checks.py
 |     ├── 📜 info.py
 |     ├── 📜 io.py
-|     ├── 📜 metadata.py
+| ├── 📁 metadata
+|     ├── 📁 scripts
+|         ├── 📜 check_metadata_archive.py
+|     ├── 📜 check_metadata.py
+|     ├── 📜 info.py
+|     ├── 📜 io.py
+|     ├── 📜 manipulation.py
+|     ├── 📜 standards.py
 | ├── 📁 data_transfer
 |     ├── 📜 download_data.py
 |     ├── 📜 upload_data.py
@@ -33,7 +40,6 @@ The current software structure is described below:
 |         ├── 📜 run_disdrodb_l0b_concat.py
 |         ├── 📜 run_disdrodb_l0b_concat_station.py
 |     ├── 📜 check_configs.py
-|     ├── 📜 check_metadata.py
 |     ├── 📜 check_standards.py
 |     ├── 📜 io.py
 |     ├── 📜 issue.py

pyproject.toml

@@ -59,22 +59,22 @@ packages = ["disdrodb"]
 
 [project.scripts]
 # L0A
-run_disdrodb_l0a_station="disdrodb.l0.scripts.run_disdrodb_l0a_station:run_disdrodb_l0a_station"
-run_disdrodb_l0a="disdrodb.l0.scripts.run_disdrodb_l0a:run_disdrodb_l0a"
+disdrodb_run_l0a_station="disdrodb.l0.scripts.run_disdrodb_l0a_station:run_disdrodb_l0a_station"
+disdrodb_run_l0a="disdrodb.l0.scripts.run_disdrodb_l0a:run_disdrodb_l0a"
 # L0B
-run_disdrodb_l0b_station="disdrodb.l0.scripts.run_disdrodb_l0b_station:run_disdrodb_l0b_station"
-run_disdrodb_l0_station="disdrodb.l0.scripts.run_disdrodb_l0_station:run_disdrodb_l0_station"
+disdrodb_run_l0b_station="disdrodb.l0.scripts.run_disdrodb_l0b_station:run_disdrodb_l0b_station"
+disdrodb_run_l0_station="disdrodb.l0.scripts.run_disdrodb_l0_station:run_disdrodb_l0_station"
 # L0B concatenation
-run_disdrodb_l0b_concat_station="disdrodb.l0.scripts.run_disdrodb_l0b_concat_station:run_disdrodb_l0b_concat_station"
-run_disdrodb_l0b_concat="disdrodb.l0.scripts.run_disdrodb_l0b_concat:run_disdrodb_l0b_concat"
+disdrodb_run_l0b_concat_station="disdrodb.l0.scripts.run_disdrodb_l0b_concat_station:run_disdrodb_l0b_concat_station"
+disdrodb_run_l0b_concat="disdrodb.l0.scripts.run_disdrodb_l0b_concat:run_disdrodb_l0b_concat"
 # L0
-run_disdrodb_l0b="disdrodb.l0.scripts.run_disdrodb_l0b:run_disdrodb_l0b"
-run_disdrodb_l0="disdrodb.l0.scripts.run_disdrodb_l0:run_disdrodb_l0"
+disdrodb_run_l0b="disdrodb.l0.scripts.run_disdrodb_l0b:run_disdrodb_l0b"
+disdrodb_run_l0="disdrodb.l0.scripts.run_disdrodb_l0:run_disdrodb_l0"
 # Data transfer
-download_disdrodb_archive="disdrodb.data_transfer.scripts.download_disdrodb_archive:download_disdrodb_archive"
-upload_disdrodb_archive="disdrodb.data_transfer.scripts.upload_disdrodb_archive:upload_disdrodb_archive"
+disdrodb_download_archive="disdrodb.data_transfer.scripts.download_disdrodb_archive:download_disdrodb_archive"
+disdrodb_upload_archive="disdrodb.data_transfer.scripts.upload_disdrodb_archive:upload_disdrodb_archive"
 # Metadata archive
-disdrodb_check_metadata_archive="disdrodb.metadata.scripts.disdrodb_check_metadata_archive:disdrodb_check_metadata_archive"
+disdrodb_check_metadata_archive="disdrodb.metadata.scripts.check_metadata_archive:check_metadata_archive"
 
 [tool.ruff]
 select = ["F",

tutorials/reader_preparation.ipynb

@@ -2593,13 +2593,13 @@
     "To run the processing of a single station, just run:    \n",
     "     \n",
     "```\n",
-    "run_disdrodb_l0_station <DATA_SOURCE> <CAMPAIGN_NAME> <STATION_NAME> -l0b True -f True -v True -d False\n",
+    "disdrodb_run_l0_station <DATA_SOURCE> <CAMPAIGN_NAME> <STATION_NAME> -l0b True -f True -v True -d False\n",
     "```\n",
     "\n",
     "To run the processing on all stations of a given campaign, just run:    \n",
     "     \n",
     "```\n",
-    "run_disdrodb_l0 --data_sources <DATA_SOURCE> --campaign_names <CAMPAIGN_NAME> -f True -v True -d False\n",
+    "disdrodb_run_l0 --data_sources <DATA_SOURCE> --campaign_names <CAMPAIGN_NAME> -f True -v True -d False\n",
     "```\n",
     "\n",
     "Have a look  [here](https://disdrodb.readthedocs.io/en/latest/readers.html#running-a-reader) for a full documentation on how to run specific DISDRODB L0 processing. \n",