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1. phylotree-rs phylotree-rs Public

   Rust crate to deal with phylogenetic trees

   Rust 12 5

2. website_projects website_projects Public

   code for projects on my website

   Python

3. HIV-DRM-machine-learning HIV-DRM-machine-learning Public

   This repo contains the data and software used to run the analyses in the "Using machine learning and Big data to explore the drug resistance landscape in HIV"

   Jupyter Notebook 5 2

4. MSR_discovery MSR_discovery Public

   finding mapping-friendly S2Dequence Reduction functions

   JavaScript

5. utils_hiv utils_hiv Public

   Functions and scripts used in a pipeline to find novel drug resistance associated mutations in HIV pol-RT

   Python 1

6. fastatools fastatools Public

   fasta file manipulation tools in one bash script

   Shell 3