remove_indels

Biopiece: remove_indels

Description

remove_indels removes indels (~-. characters) from sequences in the stream.

Usage

... | remove_indels [options]

Options

[-?         | --help]               #  Print full usage description.
[-I <file!> | --stream_in=<file!>]  #  Read input from stream file  -  Default=STDIN
[-O <file>  | --stream_out=<file>]  #  Write output to stream file  -  Default=STDOUT
[-v         | --verbose]            #  Verbose output.

Examples

To remove indels, do:

... | remove_indels

See also

transliterate_seq

transliterate_vals

Author

Martin Asser Hansen - Copyright (C) - All rights reserved.

[email protected]

August 2007

License

GNU General Public License version 2

http://www.gnu.org/copyleft/gpl.html

Help

remove_indels is part of the Biopieces framework.

http://www.biopieces.org