nf-metaomics-daisychain

Important

This is work-in-progress and not yet ready for use.

A Nextflow meta-pipeline for meta-omic data.

Metro map by James Fellows Yates.

Meta pipeline based on the concept of nf-cascade

Tip

Use nf-core pipelines launch <pipeline> to write the pipeline params.yml which can supplied as a workflow parameter : <workflow>.params_file.

Usage

Parameters are supplied to child workflows through params.yml files. These files can be generated with nf-core pipelines launch <pipeline> and supplied to the workflow.

nextflow run main.nf -params-file params.yml

Note

Parameter files can be supplied for each workflow though the <workflow>.params_file config. <workflow>.input can be set to supply a samplesheet, or override the samplesheet provided by a previous workflow (<workflow>.input and previous workflow stages take precedence over samplesheets provided through <workflow>.params_file).

Warning

Please use absolute paths for all input files.