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[REQUEST]: name argument when mapping with --read-files option

Status: Open.

#326 In maize-genetics/phg_v2;

· jaudall1 opened on Jul 21, 2025

[REQUEST]: create --output-dir if none exists

enhancementNew feature or requestNew feature or request

Status: Open.

#321 In maize-genetics/phg_v2;

· jaudall1 opened on Jul 4, 2025

[REQUEST]: Imputation accuracy metrics

Status: Open.

#306 In maize-genetics/phg_v2;

· ziggy-zaia opened on Apr 11, 2025

[BUG]: Issue running hvcf2gvcf on a merged hvcf

bugSomething isn't workingSomething isn't working

Status: Open.

#304 In maize-genetics/phg_v2;

· mtkelleher opened on Apr 3, 2025

[BUG]: hvcfs have repeated haplotype IDs

bugSomething isn't workingSomething isn't working

Status: Open.

#293 In maize-genetics/phg_v2;

· jesse-hill opened on Mar 12, 2025

[REQUEST]: hvcf2gvcf for a specific taxa list

Status: Open.

#289 In maize-genetics/phg_v2;

· jesse-hill opened on Mar 10, 2025

[BUG]: phg build-kmer-index

bugSomething isn't workingSomething isn't working

Status: Open.

#266 In maize-genetics/phg_v2;

· ClayBirkett opened on Dec 31, 2024

[REQUEST]: imputation from VCF

Status: Open.

#235 In maize-genetics/phg_v2;

· ClayBirkett opened on Oct 22, 2024

[REQUEST]: PathtoGFF Plugin

Status: Open.

#159 In maize-genetics/phg_v2;

· em255 opened on May 8, 2024