Search results

bwt as input for "mergeBWA" even if PoreC is used

Status: Open.

#340 In marbl/verkko;

· smckenzie-nano opened on Sep 29, 2025

5-untip/untip.sh run for a very long time?

Status: Open.

#338 In marbl/verkko;

· linyuiz opened on Sep 2, 2025

Incorrect assembly size

Status: Open.

#335 In marbl/verkko;

· cblazier opened on Jul 29, 2025

The --paths option can re-run the pipeline when initial asm or input file timestamps are updated

Status: Open.

#308 In marbl/verkko;

· skoren opened on Dec 11, 2024

2 chromosomal fusions from verkko 2.2 assembly not supported by the data

Status: Open.

#294 In marbl/verkko;

· tbenavi1 opened on Oct 16, 2024

Questions related to interpretation results phased assembly.

Status: Open.

#245 In marbl/verkko;

· rfinkers opened on Apr 5, 2024

Better error reporting

Status: Open.

#228 In marbl/verkko;

· Dmitry-Antipov opened on Feb 1, 2024

Snakemake 8 compatibility

enhancementNew feature or requestNew feature or request

Status: Open.

#224 In marbl/verkko;

· tbenavi1 opened on Jan 13, 2024

· 

v2.3

Strange GFA outputs in uncompressed gfa

Status: Open.

#199 In marbl/verkko;

· skoren opened on Sep 28, 2023

· 

v2.3

Homogenize trio vs hic architecture

enhancementNew feature or requestNew feature or request

Status: Open.

#197 In marbl/verkko;

· skoren opened on Sep 28, 2023

· 

v2.3

Hi-C plus Trio on same run

enhancementNew feature or requestNew feature or request

Status: Open.

#193 In marbl/verkko;

· Dmitry-Antipov opened on Sep 15, 2023

· 

v2.3

Likely incorrect ONT-based resolution

Status: Open.

#190 In marbl/verkko;

· skoren opened on Sep 12, 2023