Merge Berkeley schema (berkeley-schema-fy24/main) into Legacy schema (nmdc-schema/main)
#2195
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Update `--selected-collections` options to be consistent with Berkeley schema
Add a temporary NCBI prefix expansion
…ld-study-ids remove-jena-tdb-fuseki-gold-study-ids
Make rdf completes but only due to skipping workflows and calibrations
…lysis skip RDF conversion of metaproteomics analyses
…ration-set reason for skipping calibration_set
|
https://github.com/microbiomedata/nmdc-schema/actions/runs/11222631410 failed because building a documentation preview from a fork is not supported. see |
turbomam
requested review from
eecavanna,
naglepuff,
mslarae13 and
pkalita-lbl
eecavanna
changed the title
berkeley-schema-fy24/main) into Legacy schema (nmdc-schema/main)
pkalita-lbl
approved these changes
Oct 7, 2024
mslarae13
approved these changes
Oct 7, 2024
naglepuff
approved these changes
Oct 7, 2024
eecavanna
approved these changes
Oct 7, 2024
| slot-range-type-reporter = "src.scripts.slot_range_type_reporter:cli" | ||
| get-study-id-from-filename = "src.scripts.get_study_id_from_filename:main" | ||
| database-to-json-list-files = "src.scripts.database_to_json_list_files:split_yaml_to_json" | ||
| date-created-blank-node = "src.scripts.date_created_blank_node:print_timestamp" # prints a RDF Tutrle string, for copying into other RDF/TTL files. may need some paramterizastion. |
There was a problem hiding this comment.
There is a typo in the word "Turtle". I don't consider this to be a deal-breaker given the task at hand.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
In this PR, we merged the "Berkeley schema" fork into the "Legacy schema" upstream.
Before doing that, we created a GitHub Release in each of those repositories, for future reference:
nmdc-schemav10.9.1berkeley-schema-fy24v11.0.0rc24