Here's a quick summary of what is being taught, and by whom in the non-SWC sessions:
- Functions and Packages: Mik and Murray
- Creating functions (Mik): material taken from existing SWC lesson: http://swcarpentry.github.io/r-novice-inflammation/02-func-R.html
- Creating R packages (Mik): material taken from existing SWC lesson (probably replace the slides I've made with this - the matrial is basically identical): http://swcarpentry.github.io/r-novice-inflammation/08-making-packages-R.html
- Testing (Murray): material from Murray, plus some material from Karl Broman's Tools4RR lectures ("Software testing and debugging"): http://kbroman.org/Tools4RR/pages/schedule.html
- Data manipulation: Murray - draws upon content from http://www.datacarpentry.org/R-ecology/
- Plotting in R: Murray, Mik & Tanya (is Mik needed? - clashes with Tools4RR session) - uses the plotting material from the sessions with the summer students in December? Base R plotting: https://github.com/murraycadzow/R_tutorials/blob/master/plotting.Rmd ggplot2 material - https://github.com/smilefreak/studyGroup/blob/gh-pages/lessons/ggplot2_tutorial.Rmd
- NeSI: Sung, Tom (Otago Biochemistry), and Danny (Otago Physics)
- Accessing NeSI Resources (Sung): https://www.dropbox.com/s/7y62clg9fdpwmml/Accessing%20NeSI%20HPC%20Resources_tom_danny.pptx?dl=0
- Parallel R on NeSI (Tom): material on his repo: https://github.com/TomKellyGenetics/resbaz-2016-NeSI_Rmpi_Demo and merged on the nesi_Rmpi-demo folder
- Parallel MATLAB on NeSI (Danny): on his repo https://github.com/dannybaillie/NeSI (along with a guide to NeSI access for Otago/Institution users)
- Building web apps in Shiny (Mik): need to generate this material. Barebones example on Data Carpentry: https://github.com/datacarpentry/2015-06-30-FederalReserveBoard/wiki
- Tools for RR (morning - more advanced): Aleksandra - material TBD.
- Intro to Tools for RR (afternoon - basic): Mik - material TBD. Karl Broman has a whole (awesome) course on this: https://github.com/kbroman/Tools4RR/tree/master
- Data Carpentry: Aleksandra - material TBD (merge with Tools4RR?)
- Intro to Python: Sung - material from SWC Python lesson: http://swcarpentry.github.io/python-novice-inflammation/
- Advanced Unix Shell - David: existing material?
- Mozilla Study Groups: Mik, Murray, Tom - mainly discussion, but will need some slides for scene setting.
