What's Changed
Core leviosam2 program updates
- Calculates the ref length of mate read using "MC:Z" when available by @milkschen in #67
- Corner case handling by @milkschen in #69
- Consistency check between chain target length and FAI file when indexing by @milkschen in #73
- Allow using multiple threads to (de)compress hts files by @milkschen in #74
- leviosam_utils refactor by @milkschen in #75
- Commit logic improvements by @milkschen in #76
Workflow updates
- CRAM support in the python workflow by @milkschen in #66
- Fix a typo in the Python workflow by @milkschen in #77
- use store_true for --use_preset by @milkschen in #79
Repo updates
- Use matrix in GitHub actions by @milkschen in #61
- Update README.md by @milkschen in #62
- Non-functional readability and testing improvements by @milkschen in #65
- Action update by @milkschen in #81
- Bump version to v0.5.0 by @milkschen in #80
Full Changelog: v0.4.2...v0.5.0
Contributors
milkschen