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Refine grenepipe log header CI #142: Commit 95c91ef pushed by lczech
17m 15s dev
dev
17m 15s
Remove rule group from bam index rule. CI #141: Commit 71d7ba7 pushed by lczech
32m 53s dev
dev
32m 53s
Make freebayes vcf temp instead of pipe CI #140: Commit 0d55606 pushed by lczech
35m 40s dev
dev
35m 40s
Workaround for single-three freebayes issue CI #139: Commit e1699a6 pushed by lczech
31m 39s dev
dev
31m 39s
Fix for Ensembl VEP cache changing their file paths CI #138: Commit 37706cb pushed by lczech
36m 50s dev
dev
36m 50s
Refine freebayes multi file command line passing CI #137: Commit 86b8e23 pushed by lczech
35m 46s dev
dev
35m 46s
Fix bam mappings table pandas element access bug CI #136: Commit 84f303c pushed by lczech
30m 36s dev
dev
30m 36s
Test CI with conda and mamba CI #135: Commit 7cb7291 pushed by lczech
34m 53s dev
dev
34m 53s
Fix GitHub CI to switch to conda CI #134: Commit a5b279a pushed by lczech
40m 4s dev
dev
40m 4s
Fix python named argument bug in resource function CI #133: Commit 8123c4f pushed by lczech
25m 21s dev
dev
25m 21s
Run snakefmt to destroy the formatting CI #132: Commit 135b193 pushed by lczech
13m 47s dev
dev
13m 47s
Add GATK GenomicsDBImport sharding for speedup CI #131: Commit fbf30f6 pushed by lczech
31m 43s dev
dev
31m 43s
Refine resource specifications based on empirical experience CI #130: Commit 2be3468 pushed by lczech
39m 36s dev
dev
39m 36s
Fix rule thread assignment at parse time CI #129: Commit 6c7be52 pushed by lczech
11m 3s dev
dev
11m 3s
Try fixing GitHub CI missing dependency for VEP CI #128: Commit 3e43481 pushed by lczech
43m 12s dev
dev
43m 12s
Refactor and simplify resources configuration CI #127: Commit 8943aeb pushed by lczech
34m 58s dev
dev
34m 58s
Refactor and simplify resources configuration CI #126: Commit 84eac51 pushed by lczech
2m 54s dev
dev
2m 54s
Release v0.15.0 CI #125: Commit 53912b0 pushed by lczech
42m 19s master
master
42m 19s
Update freebayes to 1.3.9, trying to fix freebayes/freebayes#764 CI #124: Commit 8192a09 pushed by lczech
42m 42s dev
dev
42m 42s
Minor print refinement in tool script CI #123: Commit 3e5fd32 pushed by lczech
38m 24s dev
dev
38m 24s
Minor refinement in benchmark plot script CI #122: Commit e54bc49 pushed by lczech
12m 41s master
master
12m 41s
Minor refinement in benchmark plot script CI #121: Commit e54bc49 pushed by lczech
1m 16s dev
dev
1m 16s
Add script to collect and plot benchmarks CI #120: Commit 57da64c pushed by lczech
12m 42s dev
dev
12m 42s
Clean up contig group rules and functions CI #119: Commit c933a09 pushed by lczech
42m 43s dev
dev
42m 43s
Add max contigs per group option CI #118: Commit 758b8ca pushed by lczech
40m 39s master
master
40m 39s