Skip to content

Issues: monarch-initiative/ontogpt

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

59 Open 148 Closed
59 Open 148 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

This error originates from a subprocess bug Something isn't working
#474 opened Nov 10, 2024 by SaraNiknamHesar
12
Using OntoGPT outside BioInformatics question Further information is requested template A request for a new or modified template
#471 opened Nov 8, 2024 by jamesfebin
6
Test on Python 3.11 to 3.13 enhancement New feature or request
#467 opened Oct 28, 2024 by caufieldjh
Don't raise errors when attempting to parse "accessory" text enhancement New feature or request
#466 opened Oct 25, 2024 by caufieldjh
Add error flag for extracted objects enhancement New feature or request
#456 opened Sep 18, 2024 by caufieldjh
Do not cache fully empty responses enhancement New feature or request
#455 opened Sep 18, 2024 by caufieldjh
1
Remove Unicode control characters enhancement New feature or request
#454 opened Sep 18, 2024 by caufieldjh
TALISMAN: update to work with non-OpenAI models
#450 opened Sep 6, 2024 by caufieldjh
Add parser for dataframes enhancement New feature or request
#446 opened Aug 26, 2024 by caufieldjh
Better catching of HTTP 401 errors enhancement New feature or request
#443 opened Aug 26, 2024 by caufieldjh
2
Support including system messages in templates enhancement New feature or request
#436 opened Aug 13, 2024 by caufieldjh
Make missing API key errors more friendly enhancement New feature or request
#368 opened Apr 29, 2024 by caufieldjh
Add grounding refiner option for SPIRES enhancement New feature or request
#361 opened Apr 1, 2024 by caufieldjh
Followup on #353 - support including annotations in schemas to model KGX output enhancement New feature or request
#356 opened Mar 26, 2024 by caufieldjh
1
Best way to apply on large quantities of documents?
#352 opened Mar 22, 2024 by serenalotreck
19
Using value set expansion with non-OBO annotator leads to 404 error
#347 opened Mar 15, 2024 by caufieldjh
2
industrial-production-specific SPIRES template A request for a new or modified template
#340 opened Feb 27, 2024 by caufieldjh
2
Provide equivalencies for phenotype terms enhancement New feature or request
#334 opened Feb 13, 2024 by caufieldjh
6
Passthrough function to provide annotations to extraction output enhancement New feature or request
#333 opened Feb 12, 2024 by caufieldjh
Provide function to include provided annotations for extractions enhancement New feature or request
#332 opened Feb 12, 2024 by caufieldjh
Preprocess to remove brackets and other punctuation before attempting grounding enhancement New feature or request
#323 opened Feb 7, 2024 by caufieldjh
Show original label from matched entities in extraction results enhancement New feature or request
#318 opened Feb 2, 2024 by caufieldjh
Add function to aggregate dataset metadata from multiple sources enhancement New feature or request
#314 opened Jan 31, 2024 by caufieldjh
1
Can we specify the range of annotator? enhancement New feature or request
#290 opened Dec 13, 2023 by kluo9
OntoGPT vs CurateGPT documentation Improvements or additions to documentation
#287 opened Dec 6, 2023 by ddooley
1
ProTip! Add no:assignee to see everything that’s not assigned.