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@morrislab

Morris Lab

Machine learning and adaptive algorithms for computational molecular biology

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  1. phylowgs phylowgs Public

    Application for inferring subclonal composition and evolution from whole-genome sequencing data.

    Python 108 55

  2. TrackSig TrackSig Public

    A framework to infer mutational signatures in cancer over time

    R 53 17

  3. qapa qapa Public

    RNA-seq Quantification of Alternative Polyadenylation

    Python 42 10

  4. pairtree pairtree Public

    Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples a…

    Python 37 11

  5. mlworkshop mlworkshop Public

    Machine learning workshop presented at GLBIO 2016

    Jupyter Notebook 11 2

  6. phylosub phylosub Public

    Python 10 11

Repositories

Showing 10 of 30 repositories
  • metient Public
    morrislab/metient’s past year of commit activity
    Jupyter Notebook 5 1 1 0 Updated Sep 25, 2024
  • orchard Public
    morrislab/orchard’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Jun 24, 2024
  • pairtree Public

    Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneity. Pairtree focuses on scaling to many more cancer samples and cancer cell subpopulations than other algorithms, and on producing concise and informative interactive characterizations of posterior uncertainty.

    morrislab/pairtree’s past year of commit activity
    Python 37 MIT 11 0 1 Updated Apr 18, 2024
  • qapa Public

    RNA-seq Quantification of Alternative Polyadenylation

    morrislab/qapa’s past year of commit activity
    Python 42 GPL-3.0 10 4 0 Updated Jun 16, 2023
  • GenomeTrackSig Public
    morrislab/GenomeTrackSig’s past year of commit activity
    R 3 MIT 0 0 0 Updated May 5, 2023
  • TrackSigFreq Public

    R package for TrackSig and TrackSigFreq

    morrislab/TrackSigFreq’s past year of commit activity
    R 5 MIT 0 2 0 Updated Oct 31, 2022
  • RNAcompete_classifier Public

    This repository contains the code and data for training the RNAcompete experiment classifier used in Ray et al. 2022

    morrislab/RNAcompete_classifier’s past year of commit activity
    Python 1 0 0 0 Updated Oct 28, 2022
  • phylowgs Public

    Application for inferring subclonal composition and evolution from whole-genome sequencing data.

    morrislab/phylowgs’s past year of commit activity
    Python 108 GPL-3.0 55 60 5 Updated Oct 12, 2022
  • PAN-cODE Public
    morrislab/PAN-cODE’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 20, 2022
  • mtor-rcc Public

    Analysis of TCGA/IMPACT datasets, and mTOR mutation status across cancer types

    morrislab/mtor-rcc’s past year of commit activity
    R 0 1 0 0 Updated Apr 19, 2022
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