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1. PyWGCNA PyWGCNA Public

   PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

   Jupyter Notebook 280 64

2. TranscriptClean TranscriptClean Public

   Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

   Python 70 19

3. swan_vis swan_vis Public

   A Python library to visualize and analyze long-read transcriptomes

   Jupyter Notebook 63 11

4. lapa lapa Public

   Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

   Jupyter Notebook 31 13

5. Topyfic Topyfic Public

   Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

   Jupyter Notebook 11 1

6. TALON TALON Public

   Technology agnostic long read analysis pipeline for transcriptomes

   Python 155 31