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Release 1.87.0 #1375

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Release 1.87.0 #1375

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@sivkovic sivkovic commented Nov 5, 2024

Changelog

  • Update Argos Report Operator
  • Argos BAM Generation Operator
  • Start automatic processing
  • Chronos Improvements
  • Check for missing FASTQs

nikhil and others added 30 commits September 24, 2024 16:52
@nikhil
Added new argos report operator
899fcbc
@nikhil
Add argos report operator test
bb0a546
@nikhil
Updated fixtures
fa4cf20
@nikhil
Update operator to work with updated fixtures
d3e2ec4
@nikhil
Updated expected inputs for operator
0d7fb0a
@nikhil
Update test operator, and test values
1e307d0
@nikhil
Switch from samples to pairing to preserve pairing order
aa62ab0
@sivkovic
Add event for posting links to files
d3d9445
@sivkovic
Send event from argos operator
f5c371d
@sivkovic
Change event handler for links
179c5f0
@sivkovic
Switch from description to comment
f7de58f
@sivkovic
Merge pull request #1366 from mskcc/master
e95894e 
Master to develop
Update input_template.json.jinja2
1d6aeb2
Revert "Update input_template.json.jinja2"
ac796a3 
This reverts commit 1d6aeb2.
Update input_template.json.jinja2
4c2c096
@buehlere
Merge pull request #1368 from mskcc/feature/chipvar_resource
b206785 
Update Chipvar input_template.json.jinja2
@nikhil
Merge pull request #1363 from mskcc/feature/update_argos_report
a362ed9 
Update argos report operator
@sivkovic
Put delivery links into description of the Run ticket
616982f
@sivkovic
Fix import
1b898c4
@sivkovic
Fix iteration through links
4e39b27
@sivkovic
add newline between links
d4d3320
@sivkovic
Try different link format
fa6d11e
@sivkovic
Fix formatting
7ac7e1e
@sivkovic
Activate automatic runs and skip samples which have created bams
500fe09
@sivkovic
Merge pull request #1367 from mskcc/feature/delivery_links
b67707a 
Add delivery links to JIRA
@sivkovic
Merge pull request #1369 from mskcc/feature/activate_automatic_runs
9b960b7 
Activate automatic runs and skip already processed samples in Chronos
@sivkovic
Merge pull request #1371 from mskcc/master
1c0eb6b 
Master to Develop
@nikhil
Updated fixtures
dba9fec
@nikhil
Add argos_bam operator
a9a574f
@nikhil
Add argos_bam operator tests
89b01d5
nikhil and others added 14 commits October 31, 2024 15:07
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@nikhil nikhil Awaiting requested review from nikhil

@allanbolipata allanbolipata Awaiting requested review from allanbolipata

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3 participants
@sivkovic @nikhil @buehlere