part 2 of the mmol fix #39
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| name: CI | |
| on: | |
| # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming | |
| # Existing codes likely still have "master" as the primary branch | |
| # Both are tracked here to keep legacy and new codes working | |
| push: | |
| branches: | |
| - "master" | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "master" | |
| - "main" | |
| jobs: | |
| CI: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.8"] | |
| # include: | |
| # - os: ubuntu-latest | |
| # python-version: 3.7 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Additional info about the build | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on the whole conda setup: https://github.com/conda-incubator/setup-miniconda | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| id: conda-setup | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: SESAMI_web_git | |
| # Get date for the cache key | |
| - name: Get current time | |
| uses: josStorer/[email protected] | |
| id: current-time | |
| # Actual caching | |
| - name: Cache conda env | |
| uses: actions/cache@v3 | |
| id: cache | |
| env: | |
| # Increase this value to reset cache if mols.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| # TODO: Figure out how to avoid this hard coded path. For some reason $CONDA does not work. | |
| path: /usr/share/miniconda/envs/SESAMI_web_git | |
| key: | |
| # Key contains current year and month to ensure it is updated once a month | |
| ${{ runner.os }}-${{ runner.arch }}-conda-${{ steps.current-time.outputs.year }}-${{ | |
| steps.current-time.outputs.month }}-${{ hashFiles('devtools/conda-envs/mols.yml') }}-${{ | |
| env.CACHE_NUMBER }} | |
| # Install environment from yaml file if cache-hit == false | |
| - name: Update conda env | |
| run: mamba env update -n SESAMI_web_git -f devtools/conda-envs/env.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| # - name: Debugging | |
| # run: | | |
| # pwd | |
| # ls | |
| # - name: Install package | |
| # run: | | |
| # pip install -e . | |
| # pip install pytest-cov codecov | |
| # conda list | |
| - name: Run tests | |
| run: | | |
| python -m pytest |