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@nanoporetech

Oxford Nanopore Technologies

Direct DNA/RNA analysis for anyone, anywhere.

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 746 99

  2. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 483 85

  3. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 165 27

  4. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 426 130

  5. modkit modkit Public

    A bioinformatics tool for working with modified bases

    Rust 220 19

  6. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 183 28

Repositories

Showing 10 of 91 repositories
  • minknow_api Public

    Protobuf and gRPC specifications for the MinKNOW API

    nanoporetech/minknow_api’s past year of commit activity
    Python 65 13 36 2 Updated Oct 29, 2025
  • fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    nanoporetech/fast-ctc-decode’s past year of commit activity
    Rust 183 MIT 28 3 1 Updated Oct 27, 2025
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 746 99 89 (1 issue needs help) 3 Updated Oct 21, 2025
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 10 6 2 0 Updated Oct 14, 2025
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 165 27 45 3 Updated Oct 1, 2025
  • ont-minimap2 Public

    Cross platform builds for minimap2

    nanoporetech/ont-minimap2’s past year of commit activity
    CMake 6 2 0 0 Updated Sep 30, 2025
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 220 19 228 0 Updated Sep 11, 2025
  • ont-output-specifications Public

    Specifications for output files from MinKNOW, dorado and others

    nanoporetech/ont-output-specifications’s past year of commit activity
    Python 5 0 0 0 Updated Sep 3, 2025
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 483 85 24 2 Updated Aug 19, 2025
  • pyspoa Public

    Python bindings to spoa

    nanoporetech/pyspoa’s past year of commit activity
    Python 21 3 3 0 Updated Aug 15, 2025
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