Skip to content
@nanoporetech

Oxford Nanopore Technologies

Direct DNA/RNA analysis for anyone, anywhere.

Pinned Loading

  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 685 86

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 176 22

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 463 82

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 150 21

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 183 27

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 420 125

Repositories

Showing 10 of 92 repositories
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 198 15 187 (1 issue needs help) 0 Updated Jun 25, 2025
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 8 3 1 0 Updated Jun 24, 2025
  • bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    nanoporetech/bonito’s past year of commit activity
    Python 420 125 6 3 Updated Jun 18, 2025
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 685 86 96 (1 issue needs help) 4 Updated Jun 12, 2025
  • dorado-docs Public

    Dorado Documentation

    nanoporetech/dorado-docs’s past year of commit activity
    Python 6 1 0 0 Updated Jun 9, 2025
  • ont-output-specifications Public

    Specifications for output files from MinKNOW, dorado and others

    nanoporetech/ont-output-specifications’s past year of commit activity
    Python 0 0 0 0 Updated Jun 5, 2025
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 463 82 25 1 Updated May 23, 2025
  • pomfret Public
    nanoporetech/pomfret’s past year of commit activity
    C 20 0 0 0 Updated May 21, 2025
  • rerio Public

    Research release basecalling models and configurations

    nanoporetech/rerio’s past year of commit activity
    Python 113 11 4 1 Updated May 21, 2025
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 150 21 34 3 Updated May 20, 2025
View all repositories