Merge branch 'gpimm/numpy_2.0' into 'master'

update to numpy 2.0

See merge request minknow/pod5-file-format!347

Author: 0x55555555

CHANGELOG.md

@@ -12,6 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ## Added
 
 - Typechecking on `Writer.add_reads` to inform users incorrectly passing `ReadRecords`
+- Compatibility with numpy 2.0.
 
 ## Fixed
 

c++/pod5_format_pybind/api.h

@@ -65,7 +65,8 @@ class Pod5SignalCacheBatch {
             return py_samples;
         }
         for (auto const & row_samples : m_cached_data.samples()) {
-            py_samples.append(py::array_t<std::int16_t>(row_samples.size(), row_samples.data()));
+            py_samples.append(py::array_t<std::int16_t>(
+                {row_samples.size()}, {sizeof(std::int16_t)}, row_samples.data()));
         }
 
         return py_samples;

python/pod5/pyproject.toml

@@ -28,11 +28,12 @@ dependencies = [
     "more_itertools",
     "numpy >= 1.21.0",
     'typing-extensions; python_version<"3.8"',
-    "pyarrow ~= 14.0.0",
+    "pyarrow ~= 16.1.0",
     "pytz",
     "packaging",
     "polars~=0.19",
-    "h5py~=3.10.0",
+    'h5py~=3.11.0; python_version>"3.8"',
+    'h5py~=3.10.0; python_version<="3.8"',
     "vbz_h5py_plugin",
     "tqdm"
 ]