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46 followers · 7 following

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: StarstruckAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: StarstruckAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Organizations

@sccn @bids-standard @hed-standard @UCF-BRaIN-Lab @MERIIT @nemarDatasets @unisep-framework @EEGManySteps @eeg2025 @OpenScience-Collective @signalJourney @Annotation-Garden

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neuromechanist/README.md

Hi, I'm Yahya

Assistant Project Scientist & Principal Investigator at the Swartz Center for Computational Neuroscience, UC San Diego

I develop open-source tools for biosignal analysis and contribute to neuroinformatics standards. My research integrates computational neuroscience with human cognition and behavior, focusing on EEG/EMG signal processing, neuroinformatics infrastructure, and the neural control of movement.

Affiliations


SCCN
Project Scientist
BIDS
Maintainer
HED
Working Group
NEMAR
Admin
Annotation Garden
Founder
OSC
Founder

Featured Work

HBN-EEG FAIR implementation of the Healthy Brain Network EEG dataset; 3,600+ participants, BIDS-formatted with HED annotations
NEMAR Citations Dashboard Interactive analysis of dataset citations and research impact within the NEMAR ecosystem
Annotation Garden Open infrastructure for collaborative annotation of neuroscience stimuli
signalJourney Specification and toolkit for standardizing electrophysiology processing pipelines

Open-Source Tools

Standards & Infrastructure

Signal Processing

  • emg2mu - PyTorch-accelerated EMG decomposition
  • emgio - Unified interface for EMG data formats
  • hdEMG-Decomposition - ICA decomposition for high-density sEMG

AI/LLM Integration

  • MATLAB-MCP - Model Context Protocol for MATLAB
  • HED-MCP - MCP implementation for HED annotations

Research Initiatives

  • EEGManySteps - Community-driven standardization for Mobile Brain/Body Imaging
  • unisep - Unified Sensor Placement framework for annotating wearables placement

Connect

Website Google Scholar LinkedIn Mastodon

github-snake

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  1. hdEMG-Decomposition hdEMG-Decomposition Public

    MATLAB implementation of (FAST) ICA decomposition of hd-sEMG signals to motor units

    MATLAB 44 8

  2. emg2mu emg2mu Public

    PyTorch-Accelerated High-Density EMG Decomposition to Motor Units in Python

    Jupyter Notebook 11 3

  3. emgio emgio Public

    A unified interface to convert EMG data from various systems to EDF/BDF

    Python 4 2

  4. Annotation-Garden/HEDit Annotation-Garden/HEDit Public

    Multi-Agent System for HED Annotation Generation

    Python 1 2

  5. signalJourney/signalJourney signalJourney/signalJourney Public

    Mapping the path from raw to processed biosignals

    Python 1

  6. Annotation-Garden/image-annotation Annotation-Garden/image-annotation Public

    Web-based annotation tool for static images in the Annotation Garden ecosystem

    Python 1