Add script for brain processing #2
Conversation
| % Participants are first aligned into a common space. The JHU-ICBM-FA template is used as a reference for all subjects. | ||
|
|
||
| % Affine transfo on FA | ||
| sct_unix('isct_antsRegistration --dimensionality 3 --transform affine[1] --metric MI[FA.nii.gz,JHU-ICBM-FA-1mm.nii.gz,1,32] --convergence 30x10x5 --shrink-factors 5x3x1 --smoothing-sigmas 0x0x0mm --output [step0,src_regStep0.nii] --verbose 1'); |
There was a problem hiding this comment.
sct_unix does not seem to be defined anywhere in this repos
|
I am closing this PR as we have not considered the diffusion processing at this stage. But the branch remains active in case it is the case one day. |
|
I would reopen because I prefer to have branches associated with PRs (even if we keep PRs for a while), rather than accumulating stale branches. At some point, repository maintainers will not know the purpose of each branch and it will be more work to reach out to the branch creator to ask why this branch was created. With PRs, we can describe the purpose of a specific branch (and decide if we need to keep or not in the long term). I've added the label "wontfix" so we know this PR is not a priority. |
Processing script for WM atlas registration