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Normalization Tab Algorithm (#28)
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* normalization algorithm diagram added

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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mpatrou and pre-commit-ci[bot] authored May 8, 2024
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10 changes: 3 additions & 7 deletions docs/source/design/index.rst
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--------

.. toctree::
:maxdepth: 1
:maxdepth: 2

instrument
reduction_plan
reduction_plan_mvp
oncat
oncat_general
oncat_mvp
tab_reduction_plan
tab_normalization
109 changes: 109 additions & 0 deletions docs/source/design/normalization_algo.rst
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.. _normalization_algo:

IN PROGRESS

Normalization Algorithm
=========================


.. mermaid::

stateDiagram-v2
[*] --> NormalizationInput
NormalizationInput --> NormalizationAlgorithm
%%SaveData-->NormalizationOutputs
NormalizationAlgorithm-->NormalizationOutputs

state NormalizationInput{
Prerequisite-->NormalizationUserInputs
Prerequisite-->AdditionalInstrumentInputs?
state Prerequisite {
ReductionPlan
note left of ReductionPlan
required fields for Normalization:
UBMatrix, Background, Vanadium and Flux for every instrument and
Mask, Tube and Detector only for SNAP, CORELLI, TOPAZ and MANDI (Laue).
end note
}
state NormalizationUserInputs {
Projections
Extents
Bins
Symmetry
Directory
}
}

state NormalizationAlgorithm {

CheckInstrumentType-->Laue
CheckInstrumentType-->Wand2
CheckInstrumentType-->Demand

state Laue{
l_load: LoadEachDataRun
l_apply: ApplyCalibration
l_crop:CropWorkspace
l_ub:LoadUB
l_qsample:ConvertToQSample
l_background:LoadBackground
l_hkl:NormalizeToHKL
l_compl:CompleteRuns

[*] --> l_load
l_load --> l_apply
l_apply-->l_crop
l_crop-->l_ub
l_ub-->l_qsample
l_qsample-->l_background
l_background-->l_hkl
l_hkl-->l_load
l_hkl-->l_compl
l_compl-->SaveData
}

state Wand2{
w_ub:LoadUB
w_background:LoadBackground
w_hkl:NormalizeToHKL

[*]-->LoadData
LoadData-->w_ub
w_ub-->w_background
w_background-->w_hkl
w_hkl-->SaveData
}

state Demand{
d_load: LoadEachDataRun
d_ub:LoadUB
d_background:LoadBackground
d_hkl:NormalizeToHKL
d_compl:CompleteRuns

[*]-->d_load
d_load-->d_ub
d_ub-->d_background
d_background-->d_hkl
d_hkl-->d_load
d_hkl-->d_compl
d_compl-->SaveData
}
state SaveData{
SaveUB
SaveDataHistogram
SaveNormHistogram
SaveBkgDataHistogram
}
}
state NormalizationOutputs{
NormalizationUBMatrix?
DataHistogram
NormHistogram
BkgDataHistogram
BkgNormHistogram
}

The Algorithm is executed in the Model side. In case of SNAP, CORELLI, TOPAZ, MANDI and DEMAND the runs can be calculated
in parallel.
The script is described in detail here: `Normalization Script <https://ornlrse.clm.ibmcloud.com/rm/web#action=com.ibm.rdm.web.pages.showArtifactPage&artifactURI=https%3A%2F%2Fornlrse.clm.ibmcloud.com%2Frm%2Fresources%2FTX_gl6-gMwZEe6kustJDRk6kQ&componentURI=https%3A%2F%2Fornlrse.clm.ibmcloud.com%2Frm%2Frm-projects%2F_DADVIOHJEeyU5_2AJWnXOQ%2Fcomponents%2F_DEP4oOHJEeyU5_2AJWnXOQ&vvc.configuration=https%3A%2F%2Fornlrse.clm.ibmcloud.com%2Frm%2Fcm%2Fstream%2F_DEcs8OHJEeyU5_2AJWnXOQ>`_.
14 changes: 14 additions & 0 deletions docs/source/design/tab_normalization.rst
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.. _tab_normalization:

=================================================
Normalization - Reciprocal Space Recostruction
=================================================

Information related to the Normalization Tab.



.. toctree::
:maxdepth: 1

normalization_algo
18 changes: 18 additions & 0 deletions docs/source/design/tab_reduction_plan.rst
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.. _tab_reduction_plan:

===============
Reduction Plan
===============

Information related to the Reduction Plan Tab.


.. toctree::
:maxdepth: 1

instrument
reduction_plan
oncat
oncat_general
oncat_mvp
reduction_plan_mvp

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