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406 Open 3,153 Closed
406 Open 3,153 Closed
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Issues list

nextflow inspect does not reflect singularity.registry
#6163 opened Jun 5, 2025 by awgymer
Restrict azcopy memory usage by task setting storage/azure
#6161 opened Jun 4, 2025 by adamrtalbot
docker + output glob pattern => Nextflow stalls forever lang/processes software/docker
#6160 opened Jun 4, 2025 by nick-youngblut
5
azcopy creates directory on download failure which triggers further issue
#6158 opened Jun 4, 2025 by adamrtalbot
Print summary of ignored tasks when failOnIgnore is enabled
#6155 opened Jun 3, 2025 by bentsherman
Nextflow fails on version 25.04.2, last working version 24.10.5 - .command.run: command not found
#6154 opened Jun 3, 2025 by k-cyran-c4x
3
Path listFiles return type not accepted by process path input
#6152 opened Jun 3, 2025 by Gullumluvl
1
Add an env var which points to a config file for all pipelines lang/config
#6151 opened Jun 3, 2025 by BioWilko
4
docker.registry needs to override process.container when a registry is used in the container URI software/docker
#6150 opened Jun 2, 2025 by stevekm
10
resume from specific process (as in Snakemake)
#6149 opened May 31, 2025 by nick-youngblut
9
conda environments recreated on every run with Seqera Platform (-with-tower) software/conda
#6140 opened May 30, 2025 by aringeri
5
caching with module binaries files is not identifying changes
#6128 opened May 27, 2025 by ronp-cytoreason-com
4
nextflow lint success message does not reset color
#6127 opened May 27, 2025 by ScottNortonPhD
2
Retry Mechanism for GitHub Connectivity Failures in Automated Workflows software/git
#6115 opened May 22, 2025 by markpanganiban
1
@jorgee
Incorrect hash when staging repository directory
#6112 opened May 22, 2025 by DriesSchaumont
1
1
URL is de-encoded during resume, leading to pipeline failures and re-staging of files
#6109 opened May 21, 2025 by prototaxites
java.util.ConcurrentModificationException when using array jobs in Slurm
#6108 opened May 21, 2025 by xsvato01
Google Batch: file().listFiles() fails when trying to read an updating directory
#6106 opened May 20, 2025 by VasLem
Support transitive includes lang/modules
#6104 opened May 20, 2025 by henrjk
nf-test.config should be excluded from linting
#6101 opened May 19, 2025 by adamrtalbot
1
Closure defined by anonymous assignment has contradictory linting outcome
#6095 opened May 16, 2025 by ScottNortonPhD
2
Support for Pixi good first issue
#6092 opened May 16, 2025 by adamrtalbot
3
Add decompress: true option to Path.size() method
#6086 opened May 15, 2025 by prototaxites
3
GCP Batch jobs => mv: failed to close
#6080 opened May 14, 2025 by nick-youngblut
2
Cleanup after failed step
#6077 opened May 14, 2025 by bartcharbon
ProTip! no:milestone will show everything without a milestone.