Report nf-co2footprint parameters #89
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Note: first add values manually to HTML report, automize it later for map. |
…printFactory.groovy
first try adding a table of provided options
mirpedrol
approved these changes
Mar 18, 2024
plugins/nf-co2footprint/src/main/nextflow/co2footprint/CO2FootprintFactory.groovy
Outdated
Show resolved
Hide resolved
…printFactory.groovy Co-authored-by: Júlia Mir Pedrol <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I added the reporting of the nf-co2footprint params to the summery TXT output file.
To avoid having to list each individual param for the actual report (prone to being forgotten), I just grouped them by rough topics (input files, output files, params for the actual CO2 calculation) and then used a sorted map. Let me know if you know a more elegant solution.
However, I am not an HTML expert and don't know how to use this for the HTML report generation as well (without having to list each param separately). @mirpedrol would you know how to do that?