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Splitting and grouping side quest #595

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Merged
merged 40 commits into from
May 5, 2025
Merged

Splitting and grouping side quest #595

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e644f5b
First draft of splitting and grouping side quest
adamrtalbot Apr 8, 2025
5ef3953
Spread over intervals prior to grouping
adamrtalbot Apr 8, 2025
b7717ac
add splitting and grouping to nav bar
adamrtalbot Apr 8, 2025
7f76a63
Add before/after to first code change
adamrtalbot Apr 9, 2025
48cdd25
Add ch_* prefix to all channels for clarity over objects
adamrtalbot Apr 9, 2025
a9324c2
Remove "pipeline" from opening statement to focus on channels
adamrtalbot Apr 9, 2025
8e83189
Add "you will" statement to the beginning of the tutorial
adamrtalbot Apr 9, 2025
1bc2dcb
Fix typo and phrasing about combining
adamrtalbot Apr 9, 2025
2b906d9
Refine explanation of intervals and the combining method
adamrtalbot Apr 9, 2025
25c33ab
add another before/after snippet
adamrtalbot Apr 9, 2025
60f3e90
Use single BAM as input file
adamrtalbot Apr 9, 2025
5bdbce7
Remove dump from tutorial to simplify and focus splitting-grouping an…
adamrtalbot Apr 9, 2025
b19f44b
Update samplesheet
adamrtalbot Apr 10, 2025
1b3a809
fixup: Remove TODO
adamrtalbot Apr 10, 2025
5182860
Finish with a section on flattening the data to close out grouping
adamrtalbot Apr 10, 2025
c35c50f
revert main.nf
adamrtalbot Apr 10, 2025
3e90e13
Sort out notes
adamrtalbot Apr 10, 2025
2b647d3
Merge branch 'master' into splitting_and_grouping
adamrtalbot Apr 10, 2025
9508b0d
Re-order side quests slightly for more logical order, from least to m…
adamrtalbot Apr 10, 2025
019fb40
remove intervals file
adamrtalbot Apr 10, 2025
ef33c16
Add earlier map to simplify data as core concept instead of challenge
adamrtalbot Apr 10, 2025
8572a6f
Tidy code up a bit
adamrtalbot Apr 10, 2025
6d749c4
Fix side quest order
adamrtalbot Apr 10, 2025
ff32156
Reduce examples and left shift for clarity
adamrtalbot Apr 10, 2025
b332b8f
Merge branch 'master' into splitting_and_grouping
adamrtalbot Apr 11, 2025
8eeba21
Fix typo in path to splitting-and-grouping
adamrtalbot Apr 22, 2025
c15f9fc
Fix samplesheet items to be more consistent
adamrtalbot Apr 22, 2025
d8c7671
More consistent phrasing of first steps
adamrtalbot Apr 22, 2025
8cf70b5
Apply suggestions from code review
adamrtalbot Apr 22, 2025
67ce29f
Add reference to join documentation
adamrtalbot Apr 22, 2025
63c89dc
Fix headers and indentation
adamrtalbot Apr 22, 2025
5a4ab53
Rename splitting and grouping file to be consistent with other filenames
adamrtalbot Apr 23, 2025
ed4d50c
Merge branch 'master' into splitting_and_grouping
adamrtalbot Apr 23, 2025
29cc3de
Refine summary messages
adamrtalbot Apr 23, 2025
6099c1c
Use bullet points instead of numbers for key concepts of splitting-an…
adamrtalbot Apr 28, 2025
ddea988
splitting and grouping use before/after correctly
adamrtalbot Apr 28, 2025
4333a26
Splitting and grouping highlight lines
adamrtalbot Apr 28, 2025
edaa09a
fixup
adamrtalbot Apr 28, 2025
b38f11d
Merge branch 'master' into splitting_and_grouping
adamrtalbot May 2, 2025
4173bf6
Fix formatting issue
adamrtalbot May 2, 2025
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