Update top-level .gitignore #15
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Removed top-level .gitignore and replaced it with .gitignore from pathogen-repo-template: https://github.com/nextstrain/pathogen-repo-template/blob/cd1ef12987b71a1fd8dd73eafb8c8c4bd4e6d817/.gitignore
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Description of proposed changes
Replaced top-level .gitignore with .gitignore from pathogen-repo-template since this will be needed by both the add-ingest and add-phylogenetic PR's
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