Skip to content

Issues: nextstrain/mpox

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

26 Open 29 Closed
26 Open 29 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

assign-colors scripts are largely identical
#286 opened Nov 3, 2024 by jameshadfield
ingest: Automated workflow failing during fetch from NCBI blocked Dependent on external development
#285 opened Oct 31, 2024 by joverlee521
@joverlee521
4
Reached maximum recursion depth when building phylogenetic trees bug Something isn't working
#282 opened Oct 20, 2024 by mengfeip
3
Move hardcode filter query into configuration files
#273 opened Aug 20, 2024 by huddlej
1
Divergent branches on the mpox build enhancement New feature or request
#271 opened Aug 17, 2024 by BryanTegomoh
1
Mpox Clade I delineation? documentation Improvements or additions to documentation
#265 opened Aug 8, 2024 by woguta
5
Update phylogenetic GH Action workflows
#259 opened Jun 18, 2024 by joverlee521
[phylo] CI workflow DAG includes update_example_data bug Something isn't working
#237 opened Feb 13, 2024 by joverlee521
@joverlee521
fix_tree.py can create invalid tree bug Something isn't working
#232 opened Jan 22, 2024 by joverlee521
@corneliusroemer
1
Potentially include year-only sequences enhancement New feature or request
#231 opened Jan 21, 2024 by corneliusroemer
Collection issue for things to bear in mind when moving a workflow to a folder
#202 opened Sep 27, 2023 by corneliusroemer
Reverse complement reverse-complemented sequences in ingest to reduce downstream complications enhancement New feature or request
#192 opened Sep 22, 2023 by corneliusroemer
It seems that there is no Chinese sequence included? documentation Improvements or additions to documentation
#160 opened Jul 9, 2023 by Memorablea
Transmission Line Visualization Feature in Monkeypox Pipeline, Similar to the ncov Build enhancement New feature or request
#156 opened Jun 7, 2023 by AroobAlhumaidy
Additionally produce Zstd compressed outputs in ingest enhancement New feature or request
#137 opened Nov 8, 2022 by corneliusroemer
Add accession as tip label option -> easier for getting exclusion accessions quickly enhancement New feature or request
#132 opened Oct 16, 2022 by corneliusroemer
1
Ingest: differentiate date_released and date_submitted enhancement New feature or request
#104 opened Aug 18, 2022 by joverlee521
1
Ingest: Add alignmentStart/End and/or sequence length to our metadata.tsv enhancement New feature or request
#99 opened Aug 2, 2022 by corneliusroemer
Push aligned sequences up to data.nextstrain.org for download availability enhancement New feature or request
#96 opened Jul 25, 2022 by emmahodcroft
ingest: include url field enhancement New feature or request
#76 opened Jun 21, 2022 by joverlee521
2
ingest: Include more data from GenBank enhancement New feature or request
#68 opened Jun 17, 2022 by chaoran-chen
Support for GISAID data documentation Improvements or additions to documentation
#63 opened Jun 16, 2022 by huddlej
3
ingest: Split monolith transform rule enhancement New feature or request
#44 opened Jun 8, 2022 by joverlee521
ingest: thread Slack notifications enhancement New feature or request
#36 opened Jun 7, 2022 by joverlee521
1
ingest: deduplicate sequences using strain names enhancement New feature or request
#33 opened Jun 7, 2022 by joverlee521
1
ProTip! Add no:assignee to see everything that’s not assigned.