Rebuild 100k sample #84
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Rebuild 100k sample | |
| on: | |
| # cron job once a week on Mondays at 12:42 UTC | |
| schedule: | |
| - cron: '42 12 * * 1' | |
| # Manually triggered using GitHub's UI | |
| workflow_dispatch: | |
| jobs: | |
| gisaid: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: aws-batch | |
| run: | | |
| set -x | |
| declare -a config | |
| config+=(slack_token=$SLACK_TOKEN) | |
| nextstrain build \ | |
| --detach \ | |
| --cpus 16 \ | |
| --memory 31GiB \ | |
| . \ | |
| upload \ | |
| --configfile nextstrain_profiles/100k/config-gisaid.yaml \ | |
| --config "${config[@]}" \ | |
| --set-threads tree=8 | |
| artifact-name: gisaid-build-output | |
| open: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: aws-batch | |
| run: | | |
| set -x | |
| declare -a config | |
| config+=(slack_token=$SLACK_TOKEN) | |
| nextstrain build \ | |
| --detach \ | |
| --cpus 16 \ | |
| --memory 31GiB \ | |
| . \ | |
| upload \ | |
| --configfile nextstrain_profiles/100k/config-open.yaml \ | |
| --config "${config[@]}" \ | |
| --set-threads tree=8 | |
| artifact-name: open-build-output |