Search results

potential bug: band boundary hit when trailing in-dels are present at the end of a simple stripe alignment

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

needs triageMark for review and label assignmentMark for review and label assignment

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1654 In nextstrain/nextclade;

· mmolari opened on Jun 26, 2025

"Error: Internal Error: Dataset not found: 'http://localhost:3000'."

needs triageMark for review and label assignmentMark for review and label assignment

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1653 In nextstrain/nextclade;

· corneliusroemer opened on Jun 20, 2025

"Range Error: Invalid string length" in JS when launching web worker

s:nextclade_web

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1651 In nextstrain/nextclade;

· corneliusroemer opened on Jun 15, 2025

bzip2 has a native Rust implementation

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

t:featType: request of a new feature, functionality, enchancementType: request of a new feature, functionality, enchancement

Status: Open.

#1650 In nextstrain/nextclade;

· fanninpm opened on Jun 13, 2025

Suggestion crashes with OOM from around ~3k HA seqs (6MB)

package: nextclade_web

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1647 In nextstrain/nextclade;

· corneliusroemer opened on Jun 7, 2025

nextclade --help --color=never still gives colorized output

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1629 In nextstrain/nextclade;

· ivan-aksamentov opened on May 23, 2025

Different CLI outputs with <code>nextclade</code> and <code>nextclade --verbose</code>

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1627 In nextstrain/nextclade;

· ivan-aksamentov opened on May 22, 2025

Identical Sequences Assigned to Different Branches

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1595 In nextstrain/nextclade;

· RanWei1987 opened on Mar 26, 2025

Unexpected behavior: Nextclade ignores CDS unlinked to gene if gene is in gff3

Status: Open.

#1576 In nextstrain/nextclade;

· anna-parker opened on Feb 28, 2025

Difference between Nextclade and standard variant calling process

t:askType: question, request of information 1Type: question, request of information 1

Status: Open.

#1575 In nextstrain/nextclade;

· potatolover222 opened on Feb 25, 2025

Do something other than just crashing when people upload too many sequences for Nextclade

package: nextclade_web

t:bugType: bug, error, something isn't workingType: bug, error, something isn't working

Status: Open.

#1570 In nextstrain/nextclade;

· corneliusroemer opened on Feb 21, 2025

Run <code>sort</code> command without pre-calculated minimizer index

help wantedExtra attention is neededExtra attention is needed

package: nextclade

package: nextclade_cli

t:featType: request of a new feature, functionality, enchancementType: request of a new feature, functionality, enchancement

Status: Open.

#1554 In nextstrain/nextclade;

· ivan-aksamentov opened on Nov 20, 2024