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data_output/community/genspectrum/flu/h5n1/seg1/unreleased/README.md
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| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg1/unreleased/genome_annotation.gff3
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| . . CDS 28 2307 . + . gene="PB2" |
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data_output/community/genspectrum/flu/h5n1/seg1/unreleased/pathogen.json
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| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 1/PB2)", | ||
| "reference name": "Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) polymerase (PB2) gene, complete cds", | ||
| "reference accession": "NC_007357.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
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data_output/community/genspectrum/flu/h5n1/seg1/unreleased/reference.fasta
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| >NC_007357.1 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) polymerase (PB2) gene, complete cds | ||
| AGCAAAAGCAGGTCAATTATATTCAATATGGAAAGAATAAAAGAACTAAGAGATCTAATGTCGCAGTCCC | ||
| GCACTCGCGAGATACTAACAAAAACCACTGTGGATCATATGGCCATAATCAAGAAATACACATCAGGAAG | ||
| ACAAGAGAAGAACCCTGCTCTCAGAATGAAATGGATGATGGCAATGAAATATCCAATCACAGCAGACAAG | ||
| AGAATAATGGAGATGATTCCTGAAAGGAATGAGCAAGGACAAACGCTTTGGAGCAAGACAAATGATGCTG | ||
| GGTCGGACAGAGTGATGGTGTCTCCCCTAGCTGTAACTTGGTGGAACAGGAATGGGCCGACAACAAGTAC | ||
| AGTCCATTATCCAAAGGTTTACAAAACATACTTTGAGAAGGTTGAAAGGTTAAAACATGGAACCTTCGGT | ||
| CCCGTTCATTTCCGAAACCAAGTTAAAATACGTCGCCGGGTGGATATAAACCCGGGCCATGCAGATCTCA | ||
| GTGCTAAAGAAGCACAAGATGTTATCATGGAGGTCGTTTTCCCAAATGAAGTGGGAGCTAGAATATTGAC | ||
| ATCAGAGTCGCAATTGACAATAACAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCTTTA | ||
| ATGGTGGCATACATGTTGGAAAGAGAACTGGTCCGCAAAACCAGATTTCTACCGGTAGCAGGCGGAACAA | ||
| GCAGTGTGTACATTGAGGTATTGCATTTGACTCAAGGGACCTGTTGGGAACAGATGTACACTCCCGGCGG | ||
| AGAAGTAAGAAATGATGATGTTGACCAGAGTTTGATCATCGCTGCCAGAAACATTGTTAGGAGAGCAACA | ||
| GTATCAGCGGACCCACTGGCATCACTCTTGGAGATGTGTCACAGCACACAAATTGGGGGAATAAGGATGG | ||
| TGGACATCCTTAGGCAAAACCCAACTGAGGAGCAAGCTGTGGATATATGCAAAGCAGCAATGGGTTTGAG | ||
| GATCAGTTCATCCTTTAGCTTTGGAGGCTTCACTTTCAAAAGAACAAATGGATCATCCGTCAAGAAGGAA | ||
| GAGGAAGTGCTTACAGGCAACCTCCAAACATTGAAAATAAAAGTACATGAGGGGTATGAAGAATTCACAA | ||
| TGGTTGGGCGGAGAGCAACAGCTATCCTGAGGAAAGCAACTAGAAGGCTGATTCAGTTGATAGTAAGTGG | ||
| AAGAGATGAACAATCAATCGCTGAAGCGATCATTGTAGCAATGGTGTTCTCACAGGAGGATTGCATGATA | ||
| AAGGCAGTCCGAGGCGATCTGAATTTCGTGAACAGAGCAAACCAAAGATTGAACCCCATGCATCAACTCC | ||
| TGAGGCACTTCCAAAAAGATGCAAAAGTGCTGTTTCAGAACTGGGGAATTGAACCTATTGACAATGTCAT | ||
| GGGGATGATCGGAATATTACCTGACATGACTCCAAGCGCAGAGATGTCACTGAGAGGAGTGAGAGTTAGT | ||
| AAGATGGGAGTAGATGAATATTCCAGCACGGAGAGAGTGGTGGTGAGTATTGACCGTTTCTTGAGGGTCC | ||
| GAGATCAGCAGGGGAACGTACTCTTATCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAGAAGTTGAC | ||
| AATAACATATTCATCCTCAATGATGTGGGAAATCAACGGTCCTGAGTCAGTGCTTGTTAACACTTATCAA | ||
| TGGATCATCAGGAATTGGGAGACTGTAAAGATTCAATGGTCTCAAGATCCCACAATGCTGTACAATAAGA | ||
| TGGAGTTTGAATCGTTCCAATCCTTGGTGCCAAAGGCTGCCAGAAGCCAATATAGTGGATTTGTGAGAAC | ||
| ACTATTCCAACAGATGCGTGATGTTTTGGGGACATTTGATACTGTCCAAATAATCAAGCTGCTACCATTT | ||
| GCAGCAGCCCCACCGGAGCCGAGCAGAATGCAGTTTTCTTCTCTAACTGTGAATGTGAGAGGCTCAGGAA | ||
| TGAGAATACTCGTGAGGGGTAACTCCCCCGTGTTCAACTACAACAAGGCAACCAAAAGGCTTACAGTCCT | ||
| CGGAAAGGACGCAGGTGCATTAACAGAAGATCCAGACGAGGGAACAGCCGGGGTGGAATCTGCAGTATTG | ||
| AGGGGATTCCTAATTCTAGGCAGAGAGGACAAAAGATATGGACCCGCATTGAGCATCAATGAACTGAGCA | ||
| ATCTTGCAAAAGGGGAGAAGGCTAATGTATTGATAATGCAAGGAGACGTGGTGTTGGTAATGAAACGGAA | ||
| ACGGGACTTTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAGTGT | ||
| TGAATAGTTTAAAAACGACCTTGTTTCTACT |
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data_output/community/genspectrum/flu/h5n1/seg2/unreleased/README.md
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| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg2/unreleased/genome_annotation.gff3
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| . . CDS 25 2298 . + . gene="PB1" |
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data_output/community/genspectrum/flu/h5n1/seg2/unreleased/pathogen.json
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| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 2/PB1)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds", | ||
| "reference accession": "NC_007358.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
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data_output/community/genspectrum/flu/h5n1/seg2/unreleased/reference.fasta
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| >NC_007358.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds | ||
| AGCAAAAGCAGGCAAACCATTTGAATGGATGTCAATCCGACTTTACTTTTCTTAAAAGTGCCAGCGCAAA | ||
| ATGCTATAAGTACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACAC | ||
| CATGGACACAGTCAACAGAACACATCAATATTCAGAAAAGGGGAAATGGACAACGAACACAGAGACTGGA | ||
| GCACCCCAACTCAATCCGATTGATGGACCACTACCTGAGGATAATGAGCCGAGTGGGTATGCACAAACAG | ||
| ATTGTGTATTGGAAGCAATGGCTTTCCTTGAAGAATCCCACCCAGGGATCTTTGAAAACTCGTGTCTTGA | ||
| AACGATGGAAGTTGTTCAGCAAACAAGAGTGGATAAGCTGACCCAAGGTCGCCAAACCTATGACTGGACA | ||
| TTGAAAAGAAACCAGCCGGCTGCAACCGCTTTGGCCAACACTATAGAGGTCTTCAGATCGAATGGTCTAA | ||
| CAGCCAATGAATCGGGAAGGCTAATAGATTTCCTCAAAGACGTGATGGAATCAATGGATAAGGGAGAAAT | ||
| GGAAATAATAACACATTTCCAGAGAAAGAGAAGAGTGAGGGACAACATGACCAAGAAAATGGTCACACAA | ||
| AGAACAATAGGGAAGAAAAAACAAAGGCTGAACAAAAGGAGCTACCTAATAAGAGCACTGACACTGAACA | ||
| CAATGACAAAAGACGCAGAAAGAGGCAAATTGAAGAGGCGGGCAATTGCAACACCCGGGATGCAAATCAG | ||
| AGGATTCGTGTACTTTGTCGAAACACTAGCGAGGAGTATCTGTGAGAAACTTGAGCAATCTGGACTCCCC | ||
| GTCGGAGGGAATGAAAAGAAGGCTAAATTGGCAAATGTCGTGAGGAAGATGATGACTAACTCACAAGATA | ||
| CAGAGCTCTCTTTTACAATTACTGGAGACAACACCAAATGGAATGAGAATCAGAACCCTCGGATGTTTCT | ||
| AGCAATGATAACATACATCACAAGGAACCAACCTGAATGGTTTAGAAATGTCTTAAGCATTGCTCCTATA | ||
| ATGTTCTCAAACAAGATGGCAAGATTAGGGAAAGGATACATGTTCGAAAGTAAGAGCATGAAGCTACGGA | ||
| CACAAATACCAGCAGAAATGCTTGCAAGCATTGACTTGAAATACTTCAACGAATCAACGAGAAAGAAAAT | ||
| CGAGAAAATAAGACCTCTACTAATAGATGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTC | ||
| AATATGCTGAGTACAGTCTTAGGAGTTTCAATCCTGAATCTTGGGCAGAAGAGGTACACCAAAACCACAT | ||
| ACTGGTGGGACGGACTCCAATCCTCTGATGATTTCGCTCTCATAGTGAATGCACCAAATCATGAGGGAAT | ||
| AGAAGCAGGGGTGGATAGGTTCTATAGGACTTGCAAACTAGTTGGAATCAATATGACCAAGAAGAAGTCT | ||
| TACATAAATCGGACAGGAACATGTGAATTCACAAGCTTCTTCTACCGCTATGGGTTCGTAGCCAACTTCA | ||
| GTATGGAGCTGCCCAGCTTTGGAGTGTCTGGGATTAATGAATCGGCTGACATGAGCATTGGTGTTACAGT | ||
| GATAAAGAACAATATGATGGACAACGACCTTGGACCAGCAACAGCTCAGATGGCTCTTCAGCTATTCATT | ||
| AAGGACTACAGATACCCATACCGATGCCACAGGGGGGATACACAAATCCAAACGAGGAGATCATTCGAGC | ||
| TGAAGAAGCTGTGGGAGCAGACCCGCTCAAAGGCAGGACTGTTGGTTTCAGATGGAGGACCAAACCCATA | ||
| CAATATCCGGAATCTCCACATTCCGGAGGCTGGCTTGAAGTGGGAATTGATGGATGAAGACTACCAGGGC | ||
| AGACTGTGTAATCCTCTGAACCCGTTTGTTAGTCATAAGGAAATTGAGTCTGTCAACAATGCTGTGGTAA | ||
| TGCCAGCTCATGGCCCAGCCAAGAGCATGGAATATGATGCAGTTGCGACTACACATTCATGGATTCCCAA | ||
| GAGGAATCGTTCCATTCTCAACACCAGCCAAAGGGGGATTCTTGAGGATGAACAGATGTATCAGAAGTGC | ||
| TGCAATCTATTCGAGAAATTCTTCCCTAGCAGTTCATATCGGAGGCCAGTTGGAATTTCCAGCATGGTGG | ||
| AGGCCATGGTGTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAGTCTGGAAGGATTAAGAAAGAAGA | ||
| GTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCGGACGGCAAAAATAGTGAATTTAGCTT | ||
| GTCCTTCATGAAAAAATGCCTTGTTTCTACT |
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data_output/community/genspectrum/flu/h5n1/seg3/unreleased/README.md
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|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg3/unreleased/genome_annotation.gff3
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| @@ -0,0 +1,4 @@ | ||
| . . CDS 25 2175 . + . gene="PA" | ||
| . . gene 25 784 . + . gene=PAX;ID=gene-PAX | ||
| . . CDS 25 594 . + . gene=PAX;ID=cds-PAX;Parent=gene-PAX | ||
| . . CDS 596 784 . + . gene=PAX;ID=cds-PAX;Parent=gene-PAX |
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data_output/community/genspectrum/flu/h5n1/seg3/unreleased/pathogen.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 3/PA)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PA) and PA-X protein (PA-X) genes, complete cds", | ||
| "reference accession": "NC_007359.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
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data_output/community/genspectrum/flu/h5n1/seg3/unreleased/reference.fasta
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| >NC_007359.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PA) and PA-X protein (PA-X) genes, complete cds | ||
| AGCAAAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATTGTCGAGC | ||
| TTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTTGCCGCAATATG | ||
| CACGCACTTAGAAGTCTGTTTCATGTATTCAGATTTCCACTTTATTGATGAACGGGGCGAATCAACAATT | ||
| ATAGAATCTGGCGATCCCAATGCATTATTGAAACACCGGTTTGAAATAATCGAAGGGAGGGACCGAACAA | ||
| TGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGAGTTGAGAAGCCTAAATTTCTCCCAGATTT | ||
| GTATGACTACAAGGAGAACCGATTTATTGAAATTGGAGTGACACGGAGGGAAGTTCACACATACTATCTA | ||
| GAAAAAGCCAACAAGATAAAATCTGAGAAGACACACATTCACATATTCTCATTCACTGGAGAGGAAATGG | ||
| CCACCAAAGCGGACTACACCCTTGATGAAGAAAGCAGGGCCCGAATCAAAACCAGGCTGTTCACTATAAG | ||
| GCAGGAAATGGCCAGTAGGGGTTTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAGTTGAA | ||
| GAAAGATTTGAAATCACAGGGACTATGTGCAGGCTTGCCGACCAAAGTCTCCCACCTAATTTCTCCAGCC | ||
| TTGAAAAATTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAAT | ||
| GTCGAAAGAAGTAAACGCCAGAATTGAGCCATTTCTGAAGACAACACCACGCCCTCTTAGATTACCTGAT | ||
| GGGCCTCCCTGCTCTCAGCGGTCGAAGTTTTTGCTGATGGATGCCCTTAAATTAAGCATCGAAGACCCGA | ||
| GTCATGAGGGGGAGGGGATACCGCTATATGATGCAATCAAATGCATGAAAACATTTTTCGGCTGGAAAGA | ||
| GCCCAACATTGTAAAACCACATGAAAAAGGCATAAACCCCAATTACCTCCTGGCTTGGAAGCAGGTGCTG | ||
| GCAGAGCTCCAAGATATTGAAAACGAGGAGAAAATTCCAAAGACAAAGAACATGAGGAAAACAAGCCAAT | ||
| TGAAGTGGGCACTTGGTGAGAATATGGCACCAGAGAAAGTAGACTTTGAGGATTGCAAAGATGTTAGCGA | ||
| TCTAAGGCAGTATGACAGTGATGAACCAAAGCCTAGATCACTAGCAAGCTGGATCCAGAGTGAATTCAAC | ||
| AAGGCATGCGAATTGACAGATTCAAGTTGGATTGAACTTGATGAAATAGGGGAAGACGTTGCTCCAATTG | ||
| AGCACATTGCAAGTATGAGAAGGAACTATTTCACAGCGGAAGTATCCCATTGCAGGGCTACTGAATACAT | ||
| AATGAAGGGAGTGTACATAAACACAGCTTTGTTGAATGCATCCTGTGCAGCCATGGATGACTTCCAACTG | ||
| ATCCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACTAACCTGTATGGATTCCTTATAA | ||
| AAGGAAGATCCCATTTGAGAAATGACACCGATGTGGTAAACTTTGTGAGTATGGAATTCTCTCTTACTGA | ||
| TCCGAGGCTGGAGCCACACAGATGGGAAAAGTACTGCGTTCTTCGGATAGGAGACATGCTCTTACGGACT | ||
| GAAATAGGCCAAGTGTCAAGGCCCATGTTTCTTTATGTGAGAACCAATGGAACCTCCAAGATCAAGATGA | ||
| AATGGGGCATGGAAATGAGGCGATGCCCTTTTCAATCCCTTCAACAGATTGAGAGCATGATTGAGGCCGA | ||
| GTCTTCTGTCAAAGAAAAAGACATGACTAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGA | ||
| GAATCACCCAAGGGAGTGGAGGAAGGCTCCATCGGGAAGGTGTGCAGAACCTTACTGGCTAAATCTGTTT | ||
| TCAACAGTCTATATGCATCTCCACAACTCGAGGGGTTTTCAGCTGAATCAAGAAAATTGCTTCTCATTGT | ||
| TCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATTGAGGAG | ||
| TGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAA | ||
| GATAGTTGTGGCAATGCTACTATTTGCTATCCATACTGTCCAAAAAAGTACCTTGTTTCTACT |
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data_output/community/genspectrum/flu/h5n1/seg4/unreleased/README.md
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|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg4/unreleased/dataset.zip
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data_output/community/genspectrum/flu/h5n1/seg4/unreleased/genome_annotation.gff3
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| . . CDS 22 1728 . + . gene="HA" |
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data_output/community/genspectrum/flu/h5n1/seg4/unreleased/pathogen.json
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 4/HA)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) hemagglutinin (HA) gene, complete cds", | ||
| "reference accession": "NC_007362.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
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data_output/community/genspectrum/flu/h5n1/seg4/unreleased/reference.fasta
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| >NC_007362.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) hemagglutinin (HA) gene, complete cds | ||
| GCAGGGGTATAATCTGTCAAAATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTCAAAAGTG | ||
| ATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGT | ||
| TACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGATCTAAATGGAGTG | ||
| AAGCCTCTCATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCA | ||
| TCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGA | ||
| TTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAACAAACCATTTTGAGAAAATTCAGATCATC | ||
| CCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCATGGGAGGT | ||
| CCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTA | ||
| CAATAATACCAACCAAGAAGATCTTTTAGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAG | ||
| ACAAAGCTCTATCAAAACCCAACCACTTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTC | ||
| CAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAA | ||
| GCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTC | ||
| AAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTC | ||
| CAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAA | ||
| ATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATACCCCTCAGAGAGAGAGAAGAAGA | ||
| AAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTT | ||
| GGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGC | ||
| AATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGA | ||
| AGGGAATTTAATAACTTGGAAAGGAGGATAGAGAATTTAAACAAGCAGATGGAAGACGGATTCCTAGATG | ||
| TCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAA | ||
| TGTCAAGAACCTTTATGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAATGGTTGT | ||
| TTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGC | ||
| AGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTA | ||
| CCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCT | ||
| TTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATTTGCATTTAAATTTGTGAGTTCAGATTGTAGT | ||
| TAAAAACACC |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/README.md
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| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg5/unreleased/genome_annotation.gff3
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| . . CDS 46 1542 . + . gene="NP" |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/pathogen.json
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| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 5/NP)", | ||
| "reference name": "Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) nucleocapsid protein (NP) gene, complete cds", | ||
| "reference accession": "NC_007360.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
24 changes: 24 additions & 0 deletions
24
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/reference.fasta
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| >NC_007360.1 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) nucleocapsid protein (NP) gene, complete cds | ||
| AGCAAAAGCAGGGTAGATAATCACTCACTGAGTGACATCAACATCATGGCGTCTCAGGGCACCAAACGAT | ||
| CTTATGAACAGATGGAAACTGGTGGAGAACGCCAGAATGCTACTGAGATCAGAGCATCTGTTGGAAGAAT | ||
| GGTTGGTGGAATTGGGAGGTTTTATATACAGATGTGCACTGAACTCAAACTCAGCGACTATGAAGGAAGG | ||
| CTGATTCAGAACAGCATAACAATAGAGAGAATGGTTCTCTCTGCATTTGATGAAAGGAGGAACAAATACC | ||
| TGGAAGAACATCCCAGTGCGGGGAAGGACCCAAAGAAAACTGGAGGTCCAATCTACCGAAGAAGAGACGG | ||
| AAAATGGGTGAGAGAGCTGATTCTGTATGACAAAGAGGAGATCAGGAGAATTTGGCGTCAAGCGAACAAT | ||
| GGAGAAGATGCAACTGCTGGTCTCACTCACATGATGATCTGGCATTCCAATCTAAATGATGCCACATACC | ||
| AGAGAACAAGAGCTCTCGTGCGTACTGGGATGGACCCTAGAATGTGCTCTCTGATGCAAGGATCAACTCT | ||
| CCCGAGGAGATCTGGAGCTGCTGGTGCGGCAGTAAAGGGAGTCGGAACGATGGTGATGGAACTAATTCGG | ||
| ATGATAAAGCGAGGGATTAACGATCGGAATTTCTGGAGAGGTGAAAATGGGCGAAGAACAAGAATTGCAT | ||
| ATGAGAGAATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGAGCAATGATGGATCAGGT | ||
| ACGGGAAAGCAGAAATCCTGGGAATGCTGAGATTGAAGATCTCATATTTCTGGCACGGTCTGCACTCATC | ||
| CTGAGAGGATCAGTGGCCCACAAGTCCTGCTTGCCTGCTTGTGTGTACGGGCTTGCCGTGGCCAGTGGAT | ||
| ATGACTTTGAGAGAGAAGGGTACTCTCTGGTCGGGATTGATCCTTTCCGTCTGCTGCAAAACAGCCAGGT | ||
| CTTTAGTCTAATTAGACCAAATGAGAATCCAGCACATAAAAGTCAATTGGTGTGGATGGCATGCCATTCT | ||
| GCAGCATTTGAAGATCTGAGAGTCTCAAGCTTCATCAGAGGGACAAGAGTGGCCCCAAGGGGACAACTAT | ||
| CTACTAGAGGAGTTCAAATTGCTTCAAATGAGAACATGGAAACAATGGACTCCAGCACTCTTGAACTGAG | ||
| AAGCAGATATTGGGCTATAAGGACCAGGAGTGGAGGAAACACCAACCAGCAGAGAGCATCTGCAGGACAA | ||
| ATCAGTGTGCAGCCTACTTTCTCGGTACAGAGAAATCTTCCCTTCGAAAGAGCGACCATTATGGCGGCAT | ||
| TCACAGGGAATACAGAGGGCAGAACATCTGACATGAGGACTGAAATCATAAGGATGATGGAAAGCTCCAG | ||
| ACCAGAAGATGTGTCTTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATC | ||
| GTGCCTTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAATATGACAATT | ||
| GAAGAAAAATACCCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/README.md
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| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg6/unreleased/genome_annotation.gff3
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| . . CDS 21 1430 . + . gene="NA" |
17 changes: 17 additions & 0 deletions
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data_output/community/genspectrum/flu/h5n1/seg6/unreleased/pathogen.json
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| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 6/NA)", | ||
| "reference name": "Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) neuraminidase (NA) gene, complete cds", | ||
| "reference accession": "NC_007361.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
22 changes: 22 additions & 0 deletions
22
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/reference.fasta
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| >NC_007361.1 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) neuraminidase (NA) gene, complete cds | ||
| AGCAAAAGCAGGAGATTAAAATGAATCCAAATCAGAAGATAATAACCATTGGATCAATCTGTATGGTAGT | ||
| TGGGATAATTAGCTTGATGTTACAAATTGGGAACATAATCTCAATATGGGTCAGTCATTCAATTCAGACA | ||
| GGGAATCAACACCAAGCTGAACCATGCAATCAAAGCATTATTACTTATGAAAACAACACCTGGGTAAATC | ||
| AAACATATGTCAACATCAGCAATACCAATTTTCTTACTGAAAAAGCTGTGGCTTCAGTAACATTAGCGGG | ||
| CAATTCATCTCTTTGCCCCATTAGCGGATGGGCTGTACACAGTAAGGACAACGGTATAAGAATCGGTTCC | ||
| AAGGGGGATGTGTTTGTTATAAGAGAGCCGTTCATCTCATGCTCCCACTTGGAATGCAGAACTTTCTTTT | ||
| TGACTCAGGGAGCCTTGCTGAATGACAAGCACTCCAATGGGACCGTCAAAGACAGAAGCCCTCACAGAAC | ||
| ATTGATGAGTTGTCCTGTGGGTGAGGCTCCCTCCCCATATAACTCAAGGTTTGAGTCTGTTGCTTGGTCG | ||
| GCAAGTGCTTGCCATGATGGCACCAGTTGGTTGACAATTGGAATTTCTGGCCCAGACAATGGGGCTGTGG | ||
| CTGTATTGAAATACAACGGCATAATAACAGACACTATCAAGAGTTGGAGGAACAACATACTGAGAACTCA | ||
| AGAGTCTGAATGTGCATGTGTAAATGGCTCTTGCTTTACTGTAATGACTGACGGACCAAGTAATGGGCAG | ||
| GCCTCATATAAGATCTTCAAAATGGAAAAAGGGAAAGTAGTTAAATCAGTCGAATTGAATGCCCCTAATT | ||
| ATCACTATGAGGAGTGCTCCTGTTATCCTGATGCTGGCGAAATCACATGTGTGTGCAGGGATAATTGGCA | ||
| TGGCTCAAATCGGCCATGGGTATCTTTCAATCAAAATTTGGAGTATCAAATAGGATATATATGCAGTGGA | ||
| GTTTTCGGAGACAATCCACGCCCCAATGATGGAACAGGCAGTTGTGGTCCGGTGTCCCCTAACGGGGCAT | ||
| ATGGAGTAAAAGGGTTTTCATTTAAATACGGCAATGGTGTTTGGATCGGGAGAACCAAAAGCACTAATTC | ||
| CAGGAGCGGCTTTGAAATGATTTGGGATCCAAATGGGTGGACTGGAACGGACAGTAGCTTCTCGGTGAAA | ||
| CAAGATATCGTAGCAATAACTGATTGGTCAGGATATAGCGGGAGTTTTGTCCAGCATCCAGAACTGACAG | ||
| GATTAGATTGCATAAGACCTTGTTTCTGGGTTGAGCTAATCAGAGGGCGGCCCAAAGAGAGCACAATTTG | ||
| GACTAGTGGGAGCAGCATATCTTTTTGTGGTGTAAATAGTGACACTGTGGGTTGGTCTTGGCCAGACGAT | ||
| GCCGAGTTGCCATTCACCATTGACAAGTAGTTTGTTCAAAAAACTCCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg7/unreleased/README.md
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| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg7/unreleased/genome_annotation.gff3
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| . . CDS 26 784 . + . gene="M1" | ||
| . . gene 26 1007 . + . gene=M2;ID=gene-M2 | ||
| . . CDS 26 51 . + . gene=M2;ID=cds-M2;Parent=gene-M2 | ||
| . . CDS 740 1007 . + . gene=M2;ID=cds-M2;Parent=gene-M2 |
17 changes: 17 additions & 0 deletions
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data_output/community/genspectrum/flu/h5n1/seg7/unreleased/pathogen.json
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| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 7/M)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) segment 7, complete sequence", | ||
| "reference accession": "NC_007363.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
16 changes: 16 additions & 0 deletions
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data_output/community/genspectrum/flu/h5n1/seg7/unreleased/reference.fasta
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| >NC_007363.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) segment 7, complete sequence | ||
| AGCAAAAGCAGGTAGATATTGAAAAATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCGTC | ||
| CCGTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAGGATGTCTTTGCAGGAAAGAACACCGATC | ||
| TCGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAAGGGATTTTAGGATT | ||
| TGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCTTAAAT | ||
| GGAAATGGAGATCCAAACAATATGGATAGGGCAGTTAAGCTATACAAGAAGCTGAAAAGAGAAATAACAT | ||
| TCCATGGGGCTAAGGAGGTCGCACTCAGCTACTCAACCGGTGCACTTGCCAGTTGTATGGGTCTCATATA | ||
| CAACAGGATGGGAACGGTGACCACAGAAGTGGCTTTTGGCCTAGTGTGTGCCACTTGTGAGCAGATTGCA | ||
| GATTCACAGCATCGGTCTCACAGACAGATGGCAACTACCACCAACCCACTAATCAGGCATGAGAACAGAA | ||
| TGGTGCTGGCCAGCACTACAGCTAAGGCTATGGAGCAGATGGCTGGATCGAGTGAGCAGGCAGCGGAAGC | ||
| CATGGAGGTTGCTAGTCAGGCTAGGCAGATGGTGCAGGCAATGAGGACAATTGGGACTCATCCTAGCTCC | ||
| AGTGCCGGTCTGAAAGATAATCTTCTTGAAAATTTGCAGGCCTACCAAAAACGAATGGGAGTGCAAATGC | ||
| AGCGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATCATTGGGATACTGCACTTGATATTGTGGATTC | ||
| TTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCCTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGA | ||
| AGGGGTACCTGAGTCTATGAGGGAAGAGTATCGGCAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGT | ||
| CATTTTGTCAACATAGAGCTGGAGTAAAAAACTACCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
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data_output/community/genspectrum/flu/h5n1/seg8/unreleased/README.md
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| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
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data_output/community/genspectrum/flu/h5n1/seg8/unreleased/genome_annotation.gff3
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| . . CDS 15 707 . + . gene="NS1" | ||
| . . gene 15 852 . + . gene=NS2;ID=gene-NS2 | ||
| . . CDS 15 44 . + . gene=NS2;ID=cds-NS2;Parent=gene-NS2 | ||
| . . CDS 517 852 . + . gene=NS2;ID=cds-NS2;Parent=gene-NS2 |
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