-
Notifications
You must be signed in to change notification settings - Fork 28
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
6c0ee76
commit 2dc2f10
Showing
43 changed files
with
66,589 additions
and
85,727 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg1/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+3.46 KB
data_output/community/genspectrum/flu/h5n1/seg1/unreleased/dataset.zip
Binary file not shown.
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg1/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| . . CDS 28 2307 . + . gene="PB2" |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg1/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 1/PB2)", | ||
| "reference name": "Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) polymerase (PB2) gene, complete cds", | ||
| "reference accession": "NC_007357.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
35 changes: 35 additions & 0 deletions
35
data_output/community/genspectrum/flu/h5n1/seg1/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| >NC_007357.1 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) polymerase (PB2) gene, complete cds | ||
| AGCAAAAGCAGGTCAATTATATTCAATATGGAAAGAATAAAAGAACTAAGAGATCTAATGTCGCAGTCCC | ||
| GCACTCGCGAGATACTAACAAAAACCACTGTGGATCATATGGCCATAATCAAGAAATACACATCAGGAAG | ||
| ACAAGAGAAGAACCCTGCTCTCAGAATGAAATGGATGATGGCAATGAAATATCCAATCACAGCAGACAAG | ||
| AGAATAATGGAGATGATTCCTGAAAGGAATGAGCAAGGACAAACGCTTTGGAGCAAGACAAATGATGCTG | ||
| GGTCGGACAGAGTGATGGTGTCTCCCCTAGCTGTAACTTGGTGGAACAGGAATGGGCCGACAACAAGTAC | ||
| AGTCCATTATCCAAAGGTTTACAAAACATACTTTGAGAAGGTTGAAAGGTTAAAACATGGAACCTTCGGT | ||
| CCCGTTCATTTCCGAAACCAAGTTAAAATACGTCGCCGGGTGGATATAAACCCGGGCCATGCAGATCTCA | ||
| GTGCTAAAGAAGCACAAGATGTTATCATGGAGGTCGTTTTCCCAAATGAAGTGGGAGCTAGAATATTGAC | ||
| ATCAGAGTCGCAATTGACAATAACAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCTTTA | ||
| ATGGTGGCATACATGTTGGAAAGAGAACTGGTCCGCAAAACCAGATTTCTACCGGTAGCAGGCGGAACAA | ||
| GCAGTGTGTACATTGAGGTATTGCATTTGACTCAAGGGACCTGTTGGGAACAGATGTACACTCCCGGCGG | ||
| AGAAGTAAGAAATGATGATGTTGACCAGAGTTTGATCATCGCTGCCAGAAACATTGTTAGGAGAGCAACA | ||
| GTATCAGCGGACCCACTGGCATCACTCTTGGAGATGTGTCACAGCACACAAATTGGGGGAATAAGGATGG | ||
| TGGACATCCTTAGGCAAAACCCAACTGAGGAGCAAGCTGTGGATATATGCAAAGCAGCAATGGGTTTGAG | ||
| GATCAGTTCATCCTTTAGCTTTGGAGGCTTCACTTTCAAAAGAACAAATGGATCATCCGTCAAGAAGGAA | ||
| GAGGAAGTGCTTACAGGCAACCTCCAAACATTGAAAATAAAAGTACATGAGGGGTATGAAGAATTCACAA | ||
| TGGTTGGGCGGAGAGCAACAGCTATCCTGAGGAAAGCAACTAGAAGGCTGATTCAGTTGATAGTAAGTGG | ||
| AAGAGATGAACAATCAATCGCTGAAGCGATCATTGTAGCAATGGTGTTCTCACAGGAGGATTGCATGATA | ||
| AAGGCAGTCCGAGGCGATCTGAATTTCGTGAACAGAGCAAACCAAAGATTGAACCCCATGCATCAACTCC | ||
| TGAGGCACTTCCAAAAAGATGCAAAAGTGCTGTTTCAGAACTGGGGAATTGAACCTATTGACAATGTCAT | ||
| GGGGATGATCGGAATATTACCTGACATGACTCCAAGCGCAGAGATGTCACTGAGAGGAGTGAGAGTTAGT | ||
| AAGATGGGAGTAGATGAATATTCCAGCACGGAGAGAGTGGTGGTGAGTATTGACCGTTTCTTGAGGGTCC | ||
| GAGATCAGCAGGGGAACGTACTCTTATCTCCTGAAGAGGTTAGTGAAACACAGGGAACAGAGAAGTTGAC | ||
| AATAACATATTCATCCTCAATGATGTGGGAAATCAACGGTCCTGAGTCAGTGCTTGTTAACACTTATCAA | ||
| TGGATCATCAGGAATTGGGAGACTGTAAAGATTCAATGGTCTCAAGATCCCACAATGCTGTACAATAAGA | ||
| TGGAGTTTGAATCGTTCCAATCCTTGGTGCCAAAGGCTGCCAGAAGCCAATATAGTGGATTTGTGAGAAC | ||
| ACTATTCCAACAGATGCGTGATGTTTTGGGGACATTTGATACTGTCCAAATAATCAAGCTGCTACCATTT | ||
| GCAGCAGCCCCACCGGAGCCGAGCAGAATGCAGTTTTCTTCTCTAACTGTGAATGTGAGAGGCTCAGGAA | ||
| TGAGAATACTCGTGAGGGGTAACTCCCCCGTGTTCAACTACAACAAGGCAACCAAAAGGCTTACAGTCCT | ||
| CGGAAAGGACGCAGGTGCATTAACAGAAGATCCAGACGAGGGAACAGCCGGGGTGGAATCTGCAGTATTG | ||
| AGGGGATTCCTAATTCTAGGCAGAGAGGACAAAAGATATGGACCCGCATTGAGCATCAATGAACTGAGCA | ||
| ATCTTGCAAAAGGGGAGAAGGCTAATGTATTGATAATGCAAGGAGACGTGGTGTTGGTAATGAAACGGAA | ||
| ACGGGACTTTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAGTGT | ||
| TGAATAGTTTAAAAACGACCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg2/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+3.52 KB
data_output/community/genspectrum/flu/h5n1/seg2/unreleased/dataset.zip
Binary file not shown.
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg2/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| . . CDS 25 2298 . + . gene="PB1" |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg2/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 2/PB1)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds", | ||
| "reference accession": "NC_007358.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
35 changes: 35 additions & 0 deletions
35
data_output/community/genspectrum/flu/h5n1/seg2/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| >NC_007358.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds | ||
| AGCAAAAGCAGGCAAACCATTTGAATGGATGTCAATCCGACTTTACTTTTCTTAAAAGTGCCAGCGCAAA | ||
| ATGCTATAAGTACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACAC | ||
| CATGGACACAGTCAACAGAACACATCAATATTCAGAAAAGGGGAAATGGACAACGAACACAGAGACTGGA | ||
| GCACCCCAACTCAATCCGATTGATGGACCACTACCTGAGGATAATGAGCCGAGTGGGTATGCACAAACAG | ||
| ATTGTGTATTGGAAGCAATGGCTTTCCTTGAAGAATCCCACCCAGGGATCTTTGAAAACTCGTGTCTTGA | ||
| AACGATGGAAGTTGTTCAGCAAACAAGAGTGGATAAGCTGACCCAAGGTCGCCAAACCTATGACTGGACA | ||
| TTGAAAAGAAACCAGCCGGCTGCAACCGCTTTGGCCAACACTATAGAGGTCTTCAGATCGAATGGTCTAA | ||
| CAGCCAATGAATCGGGAAGGCTAATAGATTTCCTCAAAGACGTGATGGAATCAATGGATAAGGGAGAAAT | ||
| GGAAATAATAACACATTTCCAGAGAAAGAGAAGAGTGAGGGACAACATGACCAAGAAAATGGTCACACAA | ||
| AGAACAATAGGGAAGAAAAAACAAAGGCTGAACAAAAGGAGCTACCTAATAAGAGCACTGACACTGAACA | ||
| CAATGACAAAAGACGCAGAAAGAGGCAAATTGAAGAGGCGGGCAATTGCAACACCCGGGATGCAAATCAG | ||
| AGGATTCGTGTACTTTGTCGAAACACTAGCGAGGAGTATCTGTGAGAAACTTGAGCAATCTGGACTCCCC | ||
| GTCGGAGGGAATGAAAAGAAGGCTAAATTGGCAAATGTCGTGAGGAAGATGATGACTAACTCACAAGATA | ||
| CAGAGCTCTCTTTTACAATTACTGGAGACAACACCAAATGGAATGAGAATCAGAACCCTCGGATGTTTCT | ||
| AGCAATGATAACATACATCACAAGGAACCAACCTGAATGGTTTAGAAATGTCTTAAGCATTGCTCCTATA | ||
| ATGTTCTCAAACAAGATGGCAAGATTAGGGAAAGGATACATGTTCGAAAGTAAGAGCATGAAGCTACGGA | ||
| CACAAATACCAGCAGAAATGCTTGCAAGCATTGACTTGAAATACTTCAACGAATCAACGAGAAAGAAAAT | ||
| CGAGAAAATAAGACCTCTACTAATAGATGGCACAGCCTCATTGAGTCCTGGAATGATGATGGGCATGTTC | ||
| AATATGCTGAGTACAGTCTTAGGAGTTTCAATCCTGAATCTTGGGCAGAAGAGGTACACCAAAACCACAT | ||
| ACTGGTGGGACGGACTCCAATCCTCTGATGATTTCGCTCTCATAGTGAATGCACCAAATCATGAGGGAAT | ||
| AGAAGCAGGGGTGGATAGGTTCTATAGGACTTGCAAACTAGTTGGAATCAATATGACCAAGAAGAAGTCT | ||
| TACATAAATCGGACAGGAACATGTGAATTCACAAGCTTCTTCTACCGCTATGGGTTCGTAGCCAACTTCA | ||
| GTATGGAGCTGCCCAGCTTTGGAGTGTCTGGGATTAATGAATCGGCTGACATGAGCATTGGTGTTACAGT | ||
| GATAAAGAACAATATGATGGACAACGACCTTGGACCAGCAACAGCTCAGATGGCTCTTCAGCTATTCATT | ||
| AAGGACTACAGATACCCATACCGATGCCACAGGGGGGATACACAAATCCAAACGAGGAGATCATTCGAGC | ||
| TGAAGAAGCTGTGGGAGCAGACCCGCTCAAAGGCAGGACTGTTGGTTTCAGATGGAGGACCAAACCCATA | ||
| CAATATCCGGAATCTCCACATTCCGGAGGCTGGCTTGAAGTGGGAATTGATGGATGAAGACTACCAGGGC | ||
| AGACTGTGTAATCCTCTGAACCCGTTTGTTAGTCATAAGGAAATTGAGTCTGTCAACAATGCTGTGGTAA | ||
| TGCCAGCTCATGGCCCAGCCAAGAGCATGGAATATGATGCAGTTGCGACTACACATTCATGGATTCCCAA | ||
| GAGGAATCGTTCCATTCTCAACACCAGCCAAAGGGGGATTCTTGAGGATGAACAGATGTATCAGAAGTGC | ||
| TGCAATCTATTCGAGAAATTCTTCCCTAGCAGTTCATATCGGAGGCCAGTTGGAATTTCCAGCATGGTGG | ||
| AGGCCATGGTGTCTAGGGCCCGAATTGATGCACGAATTGACTTCGAGTCTGGAAGGATTAAGAAAGAAGA | ||
| GTTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCGGACGGCAAAAATAGTGAATTTAGCTT | ||
| GTCCTTCATGAAAAAATGCCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg3/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+3.56 KB
data_output/community/genspectrum/flu/h5n1/seg3/unreleased/dataset.zip
Binary file not shown.
4 changes: 4 additions & 0 deletions
4
data_output/community/genspectrum/flu/h5n1/seg3/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| . . CDS 25 2175 . + . gene="PA" | ||
| . . gene 25 784 . + . gene=PAX;ID=gene-PAX | ||
| . . CDS 25 594 . + . gene=PAX;ID=cds-PAX;Parent=gene-PAX | ||
| . . CDS 596 784 . + . gene=PAX;ID=cds-PAX;Parent=gene-PAX |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg3/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 3/PA)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PA) and PA-X protein (PA-X) genes, complete cds", | ||
| "reference accession": "NC_007359.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
33 changes: 33 additions & 0 deletions
33
data_output/community/genspectrum/flu/h5n1/seg3/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| >NC_007359.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) polymerase (PA) and PA-X protein (PA-X) genes, complete cds | ||
| AGCAAAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATTGTCGAGC | ||
| TTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACGAACAAATTTGCCGCAATATG | ||
| CACGCACTTAGAAGTCTGTTTCATGTATTCAGATTTCCACTTTATTGATGAACGGGGCGAATCAACAATT | ||
| ATAGAATCTGGCGATCCCAATGCATTATTGAAACACCGGTTTGAAATAATCGAAGGGAGGGACCGAACAA | ||
| TGGCCTGGACAGTGGTGAATAGTATCTGCAACACCACAGGAGTTGAGAAGCCTAAATTTCTCCCAGATTT | ||
| GTATGACTACAAGGAGAACCGATTTATTGAAATTGGAGTGACACGGAGGGAAGTTCACACATACTATCTA | ||
| GAAAAAGCCAACAAGATAAAATCTGAGAAGACACACATTCACATATTCTCATTCACTGGAGAGGAAATGG | ||
| CCACCAAAGCGGACTACACCCTTGATGAAGAAAGCAGGGCCCGAATCAAAACCAGGCTGTTCACTATAAG | ||
| GCAGGAAATGGCCAGTAGGGGTTTATGGGATTCCTTTCGTCAGTCCGAGAGAGGCGAAGAGACAGTTGAA | ||
| GAAAGATTTGAAATCACAGGGACTATGTGCAGGCTTGCCGACCAAAGTCTCCCACCTAATTTCTCCAGCC | ||
| TTGAAAAATTTAGAGCCTATGTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAAT | ||
| GTCGAAAGAAGTAAACGCCAGAATTGAGCCATTTCTGAAGACAACACCACGCCCTCTTAGATTACCTGAT | ||
| GGGCCTCCCTGCTCTCAGCGGTCGAAGTTTTTGCTGATGGATGCCCTTAAATTAAGCATCGAAGACCCGA | ||
| GTCATGAGGGGGAGGGGATACCGCTATATGATGCAATCAAATGCATGAAAACATTTTTCGGCTGGAAAGA | ||
| GCCCAACATTGTAAAACCACATGAAAAAGGCATAAACCCCAATTACCTCCTGGCTTGGAAGCAGGTGCTG | ||
| GCAGAGCTCCAAGATATTGAAAACGAGGAGAAAATTCCAAAGACAAAGAACATGAGGAAAACAAGCCAAT | ||
| TGAAGTGGGCACTTGGTGAGAATATGGCACCAGAGAAAGTAGACTTTGAGGATTGCAAAGATGTTAGCGA | ||
| TCTAAGGCAGTATGACAGTGATGAACCAAAGCCTAGATCACTAGCAAGCTGGATCCAGAGTGAATTCAAC | ||
| AAGGCATGCGAATTGACAGATTCAAGTTGGATTGAACTTGATGAAATAGGGGAAGACGTTGCTCCAATTG | ||
| AGCACATTGCAAGTATGAGAAGGAACTATTTCACAGCGGAAGTATCCCATTGCAGGGCTACTGAATACAT | ||
| AATGAAGGGAGTGTACATAAACACAGCTTTGTTGAATGCATCCTGTGCAGCCATGGATGACTTCCAACTG | ||
| ATCCCAATGATAAGCAAATGCAGAACCAAAGAAGGAAGACGGAAAACTAACCTGTATGGATTCCTTATAA | ||
| AAGGAAGATCCCATTTGAGAAATGACACCGATGTGGTAAACTTTGTGAGTATGGAATTCTCTCTTACTGA | ||
| TCCGAGGCTGGAGCCACACAGATGGGAAAAGTACTGCGTTCTTCGGATAGGAGACATGCTCTTACGGACT | ||
| GAAATAGGCCAAGTGTCAAGGCCCATGTTTCTTTATGTGAGAACCAATGGAACCTCCAAGATCAAGATGA | ||
| AATGGGGCATGGAAATGAGGCGATGCCCTTTTCAATCCCTTCAACAGATTGAGAGCATGATTGAGGCCGA | ||
| GTCTTCTGTCAAAGAAAAAGACATGACTAAAGAATTCTTTGAAAACAAATCAGAAACATGGCCAATTGGA | ||
| GAATCACCCAAGGGAGTGGAGGAAGGCTCCATCGGGAAGGTGTGCAGAACCTTACTGGCTAAATCTGTTT | ||
| TCAACAGTCTATATGCATCTCCACAACTCGAGGGGTTTTCAGCTGAATCAAGAAAATTGCTTCTCATTGT | ||
| TCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATTGAGGAG | ||
| TGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTAA | ||
| GATAGTTGTGGCAATGCTACTATTTGCTATCCATACTGTCCAAAAAAGTACCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg4/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+2.89 KB
data_output/community/genspectrum/flu/h5n1/seg4/unreleased/dataset.zip
Binary file not shown.
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg4/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| . . CDS 22 1728 . + . gene="HA" |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg4/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 4/HA)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) hemagglutinin (HA) gene, complete cds", | ||
| "reference accession": "NC_007362.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
27 changes: 27 additions & 0 deletions
27
data_output/community/genspectrum/flu/h5n1/seg4/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| >NC_007362.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) hemagglutinin (HA) gene, complete cds | ||
| GCAGGGGTATAATCTGTCAAAATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTCAAAAGTG | ||
| ATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGT | ||
| TACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGATCTAAATGGAGTG | ||
| AAGCCTCTCATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCA | ||
| TCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGA | ||
| TTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAACAAACCATTTTGAGAAAATTCAGATCATC | ||
| CCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCATGGGAGGT | ||
| CCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTA | ||
| CAATAATACCAACCAAGAAGATCTTTTAGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAG | ||
| ACAAAGCTCTATCAAAACCCAACCACTTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTC | ||
| CAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAA | ||
| GCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTC | ||
| AAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTC | ||
| CAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAA | ||
| ATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATACCCCTCAGAGAGAGAGAAGAAGA | ||
| AAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTT | ||
| GGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGC | ||
| AATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGA | ||
| AGGGAATTTAATAACTTGGAAAGGAGGATAGAGAATTTAAACAAGCAGATGGAAGACGGATTCCTAGATG | ||
| TCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAA | ||
| TGTCAAGAACCTTTATGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAATGGTTGT | ||
| TTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGC | ||
| AGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTA | ||
| CCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCT | ||
| TTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATTTGCATTTAAATTTGTGAGTTCAGATTGTAGT | ||
| TAAAAACACC |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+2.71 KB
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/dataset.zip
Binary file not shown.
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| . . CDS 46 1542 . + . gene="NP" |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 5/NP)", | ||
| "reference name": "Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) nucleocapsid protein (NP) gene, complete cds", | ||
| "reference accession": "NC_007360.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
24 changes: 24 additions & 0 deletions
24
data_output/community/genspectrum/flu/h5n1/seg5/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| >NC_007360.1 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) nucleocapsid protein (NP) gene, complete cds | ||
| AGCAAAAGCAGGGTAGATAATCACTCACTGAGTGACATCAACATCATGGCGTCTCAGGGCACCAAACGAT | ||
| CTTATGAACAGATGGAAACTGGTGGAGAACGCCAGAATGCTACTGAGATCAGAGCATCTGTTGGAAGAAT | ||
| GGTTGGTGGAATTGGGAGGTTTTATATACAGATGTGCACTGAACTCAAACTCAGCGACTATGAAGGAAGG | ||
| CTGATTCAGAACAGCATAACAATAGAGAGAATGGTTCTCTCTGCATTTGATGAAAGGAGGAACAAATACC | ||
| TGGAAGAACATCCCAGTGCGGGGAAGGACCCAAAGAAAACTGGAGGTCCAATCTACCGAAGAAGAGACGG | ||
| AAAATGGGTGAGAGAGCTGATTCTGTATGACAAAGAGGAGATCAGGAGAATTTGGCGTCAAGCGAACAAT | ||
| GGAGAAGATGCAACTGCTGGTCTCACTCACATGATGATCTGGCATTCCAATCTAAATGATGCCACATACC | ||
| AGAGAACAAGAGCTCTCGTGCGTACTGGGATGGACCCTAGAATGTGCTCTCTGATGCAAGGATCAACTCT | ||
| CCCGAGGAGATCTGGAGCTGCTGGTGCGGCAGTAAAGGGAGTCGGAACGATGGTGATGGAACTAATTCGG | ||
| ATGATAAAGCGAGGGATTAACGATCGGAATTTCTGGAGAGGTGAAAATGGGCGAAGAACAAGAATTGCAT | ||
| ATGAGAGAATGTGCAACATCCTCAAAGGGAAATTCCAAACAGCAGCACAAAGAGCAATGATGGATCAGGT | ||
| ACGGGAAAGCAGAAATCCTGGGAATGCTGAGATTGAAGATCTCATATTTCTGGCACGGTCTGCACTCATC | ||
| CTGAGAGGATCAGTGGCCCACAAGTCCTGCTTGCCTGCTTGTGTGTACGGGCTTGCCGTGGCCAGTGGAT | ||
| ATGACTTTGAGAGAGAAGGGTACTCTCTGGTCGGGATTGATCCTTTCCGTCTGCTGCAAAACAGCCAGGT | ||
| CTTTAGTCTAATTAGACCAAATGAGAATCCAGCACATAAAAGTCAATTGGTGTGGATGGCATGCCATTCT | ||
| GCAGCATTTGAAGATCTGAGAGTCTCAAGCTTCATCAGAGGGACAAGAGTGGCCCCAAGGGGACAACTAT | ||
| CTACTAGAGGAGTTCAAATTGCTTCAAATGAGAACATGGAAACAATGGACTCCAGCACTCTTGAACTGAG | ||
| AAGCAGATATTGGGCTATAAGGACCAGGAGTGGAGGAAACACCAACCAGCAGAGAGCATCTGCAGGACAA | ||
| ATCAGTGTGCAGCCTACTTTCTCGGTACAGAGAAATCTTCCCTTCGAAAGAGCGACCATTATGGCGGCAT | ||
| TCACAGGGAATACAGAGGGCAGAACATCTGACATGAGGACTGAAATCATAAGGATGATGGAAAGCTCCAG | ||
| ACCAGAAGATGTGTCTTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATC | ||
| GTGCCTTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAATATGACAATT | ||
| GAAGAAAAATACCCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+2.59 KB
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/dataset.zip
Binary file not shown.
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| . . CDS 21 1430 . + . gene="NA" |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 6/NA)", | ||
| "reference name": "Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) neuraminidase (NA) gene, complete cds", | ||
| "reference accession": "NC_007361.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
22 changes: 22 additions & 0 deletions
22
data_output/community/genspectrum/flu/h5n1/seg6/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,22 @@ | ||
| >NC_007361.1 Influenza A virus (A/Goose/Guangdong/1/96(H5N1)) neuraminidase (NA) gene, complete cds | ||
| AGCAAAAGCAGGAGATTAAAATGAATCCAAATCAGAAGATAATAACCATTGGATCAATCTGTATGGTAGT | ||
| TGGGATAATTAGCTTGATGTTACAAATTGGGAACATAATCTCAATATGGGTCAGTCATTCAATTCAGACA | ||
| GGGAATCAACACCAAGCTGAACCATGCAATCAAAGCATTATTACTTATGAAAACAACACCTGGGTAAATC | ||
| AAACATATGTCAACATCAGCAATACCAATTTTCTTACTGAAAAAGCTGTGGCTTCAGTAACATTAGCGGG | ||
| CAATTCATCTCTTTGCCCCATTAGCGGATGGGCTGTACACAGTAAGGACAACGGTATAAGAATCGGTTCC | ||
| AAGGGGGATGTGTTTGTTATAAGAGAGCCGTTCATCTCATGCTCCCACTTGGAATGCAGAACTTTCTTTT | ||
| TGACTCAGGGAGCCTTGCTGAATGACAAGCACTCCAATGGGACCGTCAAAGACAGAAGCCCTCACAGAAC | ||
| ATTGATGAGTTGTCCTGTGGGTGAGGCTCCCTCCCCATATAACTCAAGGTTTGAGTCTGTTGCTTGGTCG | ||
| GCAAGTGCTTGCCATGATGGCACCAGTTGGTTGACAATTGGAATTTCTGGCCCAGACAATGGGGCTGTGG | ||
| CTGTATTGAAATACAACGGCATAATAACAGACACTATCAAGAGTTGGAGGAACAACATACTGAGAACTCA | ||
| AGAGTCTGAATGTGCATGTGTAAATGGCTCTTGCTTTACTGTAATGACTGACGGACCAAGTAATGGGCAG | ||
| GCCTCATATAAGATCTTCAAAATGGAAAAAGGGAAAGTAGTTAAATCAGTCGAATTGAATGCCCCTAATT | ||
| ATCACTATGAGGAGTGCTCCTGTTATCCTGATGCTGGCGAAATCACATGTGTGTGCAGGGATAATTGGCA | ||
| TGGCTCAAATCGGCCATGGGTATCTTTCAATCAAAATTTGGAGTATCAAATAGGATATATATGCAGTGGA | ||
| GTTTTCGGAGACAATCCACGCCCCAATGATGGAACAGGCAGTTGTGGTCCGGTGTCCCCTAACGGGGCAT | ||
| ATGGAGTAAAAGGGTTTTCATTTAAATACGGCAATGGTGTTTGGATCGGGAGAACCAAAAGCACTAATTC | ||
| CAGGAGCGGCTTTGAAATGATTTGGGATCCAAATGGGTGGACTGGAACGGACAGTAGCTTCTCGGTGAAA | ||
| CAAGATATCGTAGCAATAACTGATTGGTCAGGATATAGCGGGAGTTTTGTCCAGCATCCAGAACTGACAG | ||
| GATTAGATTGCATAAGACCTTGTTTCTGGGTTGAGCTAATCAGAGGGCGGCCCAAAGAGAGCACAATTTG | ||
| GACTAGTGGGAGCAGCATATCTTTTTGTGGTGTAAATAGTGACACTGTGGGTTGGTCTTGGCCAGACGAT | ||
| GCCGAGTTGCCATTCACCATTGACAAGTAGTTTGTTCAAAAAACTCCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg7/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+2.29 KB
data_output/community/genspectrum/flu/h5n1/seg7/unreleased/dataset.zip
Binary file not shown.
4 changes: 4 additions & 0 deletions
4
data_output/community/genspectrum/flu/h5n1/seg7/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| . . CDS 26 784 . + . gene="M1" | ||
| . . gene 26 1007 . + . gene=M2;ID=gene-M2 | ||
| . . CDS 26 51 . + . gene=M2;ID=cds-M2;Parent=gene-M2 | ||
| . . CDS 740 1007 . + . gene=M2;ID=cds-M2;Parent=gene-M2 |
17 changes: 17 additions & 0 deletions
17
data_output/community/genspectrum/flu/h5n1/seg7/unreleased/pathogen.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "schemaVersion": "3.0.0", | ||
| "attributes": { | ||
| "name": "Influenza A/H5N1 (segment 7/M)", | ||
| "reference name": "Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) segment 7, complete sequence", | ||
| "reference accession": "NC_007363.1" | ||
| }, | ||
| "files": { | ||
| "reference": "reference.fasta", | ||
| "pathogenJson": "pathogen.json", | ||
| "genomeAnnotation": "genome_annotation.gff3", | ||
| "readme": "README.md" | ||
| }, | ||
| "version": { | ||
| "tag": "unreleased" | ||
| } | ||
| } |
16 changes: 16 additions & 0 deletions
16
data_output/community/genspectrum/flu/h5n1/seg7/unreleased/reference.fasta
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| >NC_007363.1 Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) segment 7, complete sequence | ||
| AGCAAAAGCAGGTAGATATTGAAAAATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCGTC | ||
| CCGTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAGGATGTCTTTGCAGGAAAGAACACCGATC | ||
| TCGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCCTGTCACCTCTGACTAAAGGGATTTTAGGATT | ||
| TGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCTTAAAT | ||
| GGAAATGGAGATCCAAACAATATGGATAGGGCAGTTAAGCTATACAAGAAGCTGAAAAGAGAAATAACAT | ||
| TCCATGGGGCTAAGGAGGTCGCACTCAGCTACTCAACCGGTGCACTTGCCAGTTGTATGGGTCTCATATA | ||
| CAACAGGATGGGAACGGTGACCACAGAAGTGGCTTTTGGCCTAGTGTGTGCCACTTGTGAGCAGATTGCA | ||
| GATTCACAGCATCGGTCTCACAGACAGATGGCAACTACCACCAACCCACTAATCAGGCATGAGAACAGAA | ||
| TGGTGCTGGCCAGCACTACAGCTAAGGCTATGGAGCAGATGGCTGGATCGAGTGAGCAGGCAGCGGAAGC | ||
| CATGGAGGTTGCTAGTCAGGCTAGGCAGATGGTGCAGGCAATGAGGACAATTGGGACTCATCCTAGCTCC | ||
| AGTGCCGGTCTGAAAGATAATCTTCTTGAAAATTTGCAGGCCTACCAAAAACGAATGGGAGTGCAAATGC | ||
| AGCGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATCATTGGGATACTGCACTTGATATTGTGGATTC | ||
| TTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCCTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGA | ||
| AGGGGTACCTGAGTCTATGAGGGAAGAGTATCGGCAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGT | ||
| CATTTTGTCAACATAGAGCTGGAGTAAAAAACTACCTTGTTTCTACT |
1 change: 1 addition & 0 deletions
1
data_output/community/genspectrum/flu/h5n1/seg8/unreleased/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| Influenza A/H5N1 dataset using [GCF_000864105.1](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000864105.1/) as the reference |
Binary file added
BIN
+2.14 KB
data_output/community/genspectrum/flu/h5n1/seg8/unreleased/dataset.zip
Binary file not shown.
4 changes: 4 additions & 0 deletions
4
data_output/community/genspectrum/flu/h5n1/seg8/unreleased/genome_annotation.gff3
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| . . CDS 15 707 . + . gene="NS1" | ||
| . . gene 15 852 . + . gene=NS2;ID=gene-NS2 | ||
| . . CDS 15 44 . + . gene=NS2;ID=cds-NS2;Parent=gene-NS2 | ||
| . . CDS 517 852 . + . gene=NS2;ID=cds-NS2;Parent=gene-NS2 |
Oops, something went wrong.