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Add CI

Add CI #8

Workflow file for this run

name: CI
on:
- push
- pull_request
jobs:
ingest:
# strategy:
# matrix:
# runtime: [docker, conda]
# permissions:
# id-token: write
uses: ./.github/workflows/pathogen-repo-ci.yaml
with:
build-target: ingest
build-args: --config '[viruses="hku1"]'