Add local fork of pathogen-repo-ci to test refactor [#8] #15
Workflow file for this run
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| name: CI | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| ingest: | |
| # strategy: | |
| # matrix: | |
| # runtime: [docker, conda] | |
| # permissions: | |
| # id-token: write | |
| name: nextstrain build ingest | |
| uses: ./.github/workflows/pathogen-repo-ci.yaml | |
| with: | |
| build-target: ingest | |
| build-args: --config viruses="hku1" | |
| phylogenetic: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: download | |
| uses: actions/download-artifact@v4 | |
| with: | |
| # hard-coding this for the moment... | |
| name: outputs-conda | |
| path: ${{ github.repository }}/ingest/ | |
| - name: expand archive | |
| run: | | |
| unzip -of ${{ github.repository }}/ingest/outputs-conda.zip 'results/*' -d ingest | |
| - name: nextstrain build phylogenetic | |
| uses: ./.github/workflows/pathogen-repo-ci.yaml | |
| with: | |
| build-target: phylogenetic | |
| build-args: --config viruses="hku1" |