Finalize data display [#20]

* Drop `host` as coloring and from filters * Add `country` to filters * Update byline to include link to repo, updated authors list, link authors to team pages * Update titles * Add `geo_resolutions` blocks to activate map panel
nextstrain · Jun 24, 2024 · c54ab61 · c54ab61
1 parent ec466b5
commit c54ab61
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Showing 4 changed files with 40 additions and 32 deletions.
diff --git a/phylogenetic/config/229e/auspice_config.json b/phylogenetic/config/229e/auspice_config.json
@@ -1,14 +1,17 @@
 {
-  "title": "Genetic diversity of Human 229E",
+  "title": "Genomic epidemiology of seasonal coronavirus 229E",
   "maintainers": [
-    {"name": "Katie Kistler"}
+    {"name": "Katie Kistler", "url": "https://bedford.io/team/katie-kistler/"},
+    {"name": "John SJ Anderson", "url": "https://bedford.io/team/john-sj-anderson/"},
+    {"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}
   ],
   "data_provenance": [
     {
       "name": "GenBank",
       "url": "https://www.ncbi.nlm.nih.gov/genbank/"
     }
   ],
+  "build_url": "https://github.com/nextstrain/seasonal-cov",
   "colorings": [
      {
       "key": "gt",
@@ -19,19 +22,18 @@
       "key": "country",
       "title": "country",
       "type": "categorical"
-    },
-    {
-      "key": "host",
-      "title": "host",
-      "type": "categorical"
     }
   ],
+  "geo_resolutions": [
+    "country",
+    "region"
+  ],
   "display_defaults": {
     "color_by": "country",
     "map_triplicate": true
   },
   "filters": [
-    "host"
+    "country"
   ],
   "panels": [
     "tree",

diff --git a/phylogenetic/config/hku1/auspice_config.json b/phylogenetic/config/hku1/auspice_config.json
@@ -1,14 +1,17 @@
 {
-  "title": "Genetic diversity of Human HKU1",
+  "title": "Genomic epidemiology of seasonal coronavirus HKU1",
   "maintainers": [
-    {"name": "Katie Kistler"}
+    {"name": "Katie Kistler", "url": "https://bedford.io/team/katie-kistler/"},
+    {"name": "John SJ Anderson", "url": "https://bedford.io/team/john-sj-anderson/"},
+    {"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}
   ],
   "data_provenance": [
     {
       "name": "GenBank",
       "url": "https://www.ncbi.nlm.nih.gov/genbank/"
     }
   ],
+  "build_url": "https://github.com/nextstrain/seasonal-cov",
   "colorings": [
      {
       "key": "gt",
@@ -19,19 +22,18 @@
       "key": "country",
       "title": "country",
       "type": "categorical"
-    },
-    {
-      "key": "host",
-      "title": "host",
-      "type": "categorical"
     }
   ],
+  "geo_resolutions": [
+    "country",
+    "region"
+  ],
   "display_defaults": {
     "color_by": "country",
     "map_triplicate": true
   },
   "filters": [
-    "host"
+    "country"
   ],
   "panels": [
     "tree",

diff --git a/phylogenetic/config/nl63/auspice_config.json b/phylogenetic/config/nl63/auspice_config.json
@@ -1,14 +1,17 @@
 {
-  "title": "Genetic diversity of Human NL63",
+  "title": "Genomic epidemiology of seasonal coronavirus NL63",
   "maintainers": [
-    {"name": "Katie Kistler"}
+    {"name": "Katie Kistler", "url": "https://bedford.io/team/katie-kistler/"},
+    {"name": "John SJ Anderson", "url": "https://bedford.io/team/john-sj-anderson/"},
+    {"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}
   ],
   "data_provenance": [
     {
       "name": "GenBank",
       "url": "https://www.ncbi.nlm.nih.gov/genbank/"
     }
   ],
+  "build_url": "https://github.com/nextstrain/seasonal-cov",
   "colorings": [
      {
       "key": "gt",
@@ -19,19 +22,18 @@
       "key": "country",
       "title": "country",
       "type": "categorical"
-    },
-    {
-      "key": "host",
-      "title": "host",
-      "type": "categorical"
     }
   ],
+  "geo_resolutions": [
+    "country",
+    "region"
+  ],
   "display_defaults": {
     "color_by": "country",
     "map_triplicate": true
   },
   "filters": [
-    "host"
+    "country"
   ],
   "panels": [
     "tree",

diff --git a/phylogenetic/config/oc43/auspice_config.json b/phylogenetic/config/oc43/auspice_config.json
@@ -1,14 +1,17 @@
 {
-  "title": "Genetic diversity of Human OC43",
+  "title": "Genomic epidemiology of seasonal coronavirus OC43",
   "maintainers": [
-    {"name": "Katie Kistler"}
+    {"name": "Katie Kistler", "url": "https://bedford.io/team/katie-kistler/"},
+    {"name": "John SJ Anderson", "url": "https://bedford.io/team/john-sj-anderson/"},
+    {"name": "the Nextstrain team", "url": "https://nextstrain.org/team"}
   ],
   "data_provenance": [
     {
       "name": "GenBank",
       "url": "https://www.ncbi.nlm.nih.gov/genbank/"
     }
   ],
+  "build_url": "https://github.com/nextstrain/seasonal-cov",
   "colorings": [
      {
       "key": "gt",
@@ -19,19 +22,18 @@
       "key": "country",
       "title": "country",
       "type": "categorical"
-    },
-    {
-      "key": "host",
-      "title": "host",
-      "type": "categorical"
     }
   ],
+  "geo_resolutions": [
+    "country",
+    "region"
+  ],
   "display_defaults": {
     "color_by": "country",
     "map_triplicate": true
   },
   "filters": [
-    "host"
+    "country"
   ],
   "panels": [
     "tree",