Re-organize configuration files to match pathogen repo guide [#27] #28
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* mv ingest/config -> ingest/defaults * mv phylogenetic/config -> phylogenetic/defaults * mv ingest/config/defaults.yaml -> ingest/defaults/config.yaml * mv phylogenetic/config/defaults.yaml -> phylogenetic/defaults/config.yaml Adjust paths within other files to match.
joverlee521
approved these changes
Jul 11, 2024
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Description of proposed changes
Rename configuration files and adjust paths within other files to match.[#27]
mv ingest/config -> ingest/defaultsmv phylogenetic/config -> phylogenetic/defaultsmv ingest/config/defaults.yaml -> ingest/defaults/config.yamlmv phylogenetic/config/defaults.yaml -> phylogenetic/defaults/config.yamlAdd convenience
cleanrule to both Snakefiles [#27]Related issue(s)
#27
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