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Annotate Nextclade TSV with emerging haplotypes and amino acid haplotypes during ingest

enhancementNew feature or requestNew feature or request

Status: Open.

#288 In nextstrain/seasonal-flu;

· huddlej opened on Dec 23, 2025

Check strain names in titer data

enhancementNew feature or requestNew feature or request

Status: Open.

#286 In nextstrain/seasonal-flu;

· joverlee521 opened on Dec 20, 2025

clades.tsv files

bugSomething isn't workingSomething isn't working

Status: Open.

#280 In nextstrain/seasonal-flu;

· dsobral opened on Dec 17, 2025

ingest: support Excel tables with new columns

enhancementNew feature or requestNew feature or request

Status: Open.

#272 In nextstrain/seasonal-flu;

· joverlee521 opened on Dec 3, 2025

[curation] All-influenza region="Asia" records

Status: Open.

#271 In nextstrain/seasonal-flu;

· jameshadfield opened on Dec 3, 2025

Ingest from INSDC

enhancementNew feature or requestNew feature or request

Status: Open.

#265 In nextstrain/seasonal-flu;

· huddlej opened on Nov 3, 2025

H3N2 sequences classified as J.2.4 in Nextclade appear only as J.2 in my Nextstrain tree

bugSomething isn't workingSomething isn't working

Status: Open.

#254 In nextstrain/seasonal-flu;

· RasmusKoRiis opened on Sep 24, 2025

ingest: prioritize records by available segments

Status: Open.

#253 In nextstrain/seasonal-flu;

· joverlee521 opened on Sep 17, 2025

Ingest workflow for CDC titer data

Status: Open.

#249 In nextstrain/seasonal-flu;

· joverlee521 opened on Aug 23, 2025

Switch builds to use new ingest outputs

Status: Open.

#234 In nextstrain/seasonal-flu;

· joverlee521 opened on May 29, 2025

Add back our ability to exclude specific sites from tree builders in the workflow with <code>tree_exclude_sites</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#232 In nextstrain/seasonal-flu;

· huddlej opened on May 23, 2025

Sunset private.nextflu.org

Status: Open.

#214 In nextstrain/seasonal-flu;

· joverlee521 opened on Feb 12, 2025