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@victorlin victorlin commented Oct 13, 2025

Description of proposed changes

This is not a protein coding gene, so it should not be translated.

Translating it currently comes with a warning

Gene length of 'rrs' is not a multiple of 3. will pad with N

which will soon be changed to an error

ERROR: Reference file 'config/Mtb_H37Rv_NCBI_Annot.gff' has errors:
    'rrs' has length 1537 which is not a multiple of 3.

Related issue(s)

nextstrain/augur#1895

Checklist

  • Checks pass
  • Tested locally with Augur PRaugur translate runs with no warnings or errors
  • Update changelog no changelog

This is not a protein coding gene, so it should not be translated.

Translating it currently comes with a warning

    Gene length of 'rrs' is not a multiple of 3. will pad with N

which will soon be changed to an error¹

    ERROR: Reference file 'config/Mtb_H37Rv_NCBI_Annot.gff' has errors:
        'rrs' has length 1537 which is not a multiple of 3.

¹ nextstrain/augur#1895
@victorlin victorlin self-assigned this Oct 13, 2025
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Merging – change was discussed on Slack.

@victorlin victorlin merged commit ac2a363 into master Oct 13, 2025
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@victorlin victorlin deleted the victorlin/fix-translate branch October 13, 2025 22:23
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2 participants