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75 Open 108 Closed
75 Open 108 Closed
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Issues list

Merge dev_tmp branch and revert CI changes
#411 opened Dec 20, 2024 by nschcolnicov
Add DREAM to the differential subworkflow enhancement New feature or request
#407 opened Dec 20, 2024 by grst
Create module for DREAM enhancement New feature or request
#406 opened Dec 20, 2024 by grst
@alanmmobbs93 @nschcolnicov
nf-schema validation for yaml-based contrasts definition enhancement New feature or request
#405 opened Dec 19, 2024 by grst
@nschcolnicov
deseq modules displaying full meta as tag instead of meta.id
#403 opened Dec 12, 2024 by nschcolnicov
Update pipeline with new modules enhancement New feature or request
#399 opened Dec 11, 2024 by nschcolnicov
@nschcolnicov
1
Update nf-core modules enhancement New feature or request
#398 opened Dec 11, 2024 by nschcolnicov
@nschcolnicov
Generate shinyngs/ modules nf-test enhancement New feature or request
#397 opened Dec 11, 2024 by nschcolnicov
@nschcolnicov
Generate rmarkdownnotebook/ nf-test enhancement New feature or request
#396 opened Dec 11, 2024 by nschcolnicov
Generate proteus/readproteingroups nf-test enhancement New feature or request
#395 opened Dec 11, 2024 by nschcolnicov
Generate gsea/gsea nf-test enhancement New feature or request
#394 opened Dec 11, 2024 by nschcolnicov
Generate gprofiler2/gost nf-test enhancement New feature or request
#393 opened Dec 11, 2024 by nschcolnicov
Generate deseq2/differential nf-test enhancement New feature or request
#392 opened Dec 11, 2024 by nschcolnicov
@alanmmobbs93
Generate custom/ modules nf-tests enhancement New feature or request
#391 opened Dec 11, 2024 by nschcolnicov
@nschcolnicov
Automatic build of gene set database
#388 opened Dec 11, 2024 by suzannejin
3 tasks
2
How to define complex contrasts? enhancement New feature or request
#386 opened Dec 10, 2024 by grst
Multi-tool functionality and subworkflows as hub of methods
#385 opened Dec 10, 2024 by suzannejin
5 of 19 tasks
14
Create a subworkflow for functional analysis methods enhancement New feature or request
#384 opened Dec 10, 2024 by suzannejin
2 of 4 tasks
@suzannejin
1
Integrate subworkflows into pipeline enhancement New feature or request
#383 opened Dec 10, 2024 by suzannejin
3 tasks
Contrast specification enhancement New feature or request
#377 opened Dec 6, 2024 by grst
differentialabundance: check that module and pipeline level tests exist and meet the community standards
#372 opened Dec 3, 2024 by nschcolnicov
@nschcolnicov
1
YAML-based contrast definition enhancement New feature or request
#370 opened Dec 3, 2024 by grst
@nschcolnicov
9
Consider splitting quarto reports into QC and results enhancement New feature or request
#369 opened Dec 3, 2024 by grst
Create nf-core module for immunedeconv and add to pipeline
#368 opened Dec 3, 2024 by grst
@nschcolnicov
5
Meta issue functional analyses enhancement New feature or request
#367 opened Dec 3, 2024 by grst
3
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